New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303942 =	96 (0.540)	2 (0.010)	6/156	27.4	0.02	intergenic (+129/+28)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	= 1478624	140 (0.620)					intergenic (+112/+31)	RCAP_rcc01372/RCAP_rcc01373	ABC transporter ATP‑binding protein/RpiR family transcriptional regulator
Rejected: Position hash score below cutoff.

CCCGA.............................................................................................................  <  NC_014034/1303946‑1303942 ............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  NC_014034/1478624‑1478539      ||||||||||||||||||||||                                                                                        aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:720993/4‑101 (MQ=255) aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  1:2124576/4‑101 (MQ=255) aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:3356470/4‑101 (MQ=255)  agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT              >  1:697560/3‑101 (MQ=255)  agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT              <  2:2570073/99‑1 (MQ=255)   gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTC             <  2:3787980/100‑1 (MQ=16)    GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC            <  2:951811/101‑1 (MQ=16)    GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC            >  1:2052000/1‑101 (MQ=16)    GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC            <  1:372020/101‑1 (MQ=16)     AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           <  2:3677878/101‑1 (MQ=12)     AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           >  2:2843439/1‑101 (MQ=16)      GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA          <  2:188508/101‑1 (MQ=12)         GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCTCCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA       <  2:1717664/101‑1 (MQ=255)          GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT      <  2:1528285/101‑1 (MQ=12)           CGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATC     >  2:2641574/1‑101 (MQ=16)           CGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATC     <  2:1414826/101‑1 (MQ=12)            GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    <  2:3040220/101‑1 (MQ=9)            GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    <  2:3078842/101‑1 (MQ=9)            GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    <  1:2395731/101‑1 (MQ=9)              TGCCCCCCTCTTGGCCTCTCGGCCAATTCCCCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  1:3956008/101‑1 (MQ=9)              TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  2:4243342/101‑1 (MQ=9)              TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  >  1:1245167/1‑101 (MQ=9)              TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  >  1:1003571/1‑101 (MQ=12)      ||||||||||||||||||||||                                                                                        CCCGA.............................................................................................................  <  NC_014034/1303946‑1303942 ............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  NC_014034/1478624‑1478539 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG