New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1334403 =195 (0.960)2 (0.010) 2/180 34.3 0.01 coding (843/1086 nt) RCAP_rcc01259 hypothetical protein
?NC_014034 1803343 = 195 (0.860)coding (1726/2124 nt) ligA DNA ligase
Rejected: Position hash score below cutoff.

ATTTCCGCGCCTGCGGCCAGCGGTATCGCAACTGCCTCGACGATGAGCGTGCGGGCAAGATCACCAATGCCGCGCTCGGGGTGACCGCTTACGCCGAGTGGCGCGCCGCC....................................................................................................  <  NC_014034/1334512‑1334403
....................................................................................................GCGCGCCGCCGTTCCCGGCTCGGCCGAATGGCAGGAGCTGCTCAGCATCGATGGCGTCGGCGAGACTTTGGCCGCCTCGGTGACCGCGGCCTTTCATCCCGGCGCCGAAC  >  NC_014034/1803343‑1803442
                                                                                                                                                                                                                  
                                 GCCTCGACGATGAGCGTGCGGGCAAGATCACCAATGCCGCGCTCGGGGTGACCGCTTACGCCGAGTGGCGCGCCGCCGTTCCCGGCTCGGCCGCATGGCAG                                                                              >  2:3477327/1‑101 (MQ=255)
                                                                              GGGTGACCGCTTACGCCGAGTGGCGCGCCGCCGTTCCCGGCTCGGCCGAATGGCAGGAGCTGCTCAGCATCGATGGCGTCGGCGAGACTTTGGCCGCCTCG                                 <  1:3477567/101‑1 (MQ=255)
                                                                                                                                                                                                                  
ATTTCCGCGCCTGCGGCCAGCGGTATCGCAACTGCCTCGACGATGAGCGTGCGGGCAAGATCACCAATGCCGCGCTCGGGGTGACCGCTTACGCCGAGTGGCGCGCCGCC....................................................................................................  <  NC_014034/1334512‑1334403
....................................................................................................GCGCGCCGCCGTTCCCGGCTCGGCCGAATGGCAGGAGCTGCTCAGCATCGATGGCGTCGGCGAGACTTTGGCCGCCTCGGTGACCGCGGCCTTTCATCCCGGCGCCGAAC  >  NC_014034/1803343‑1803442

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG