New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1395397170 (1.120)25 (0.170) 4/134 26.6 0.14 intergenic (+209/‑722) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 1396167 = 143 (0.630)coding (49/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1395362‑1395397
.....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAAC  >  NC_014034/1396167‑1396210
                                    |||||||||||||||||||||||||||||||||                                            
cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:4283484/4‑101 (MQ=1)
cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGACGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  1:320932/4‑101 (MQ=1)
 agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:558154/99‑2 (MQ=1)
 agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:3749483/99‑2 (MQ=1)
  gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            <  1:1900234/100‑3 (MQ=1)
  gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            >  1:2086180/2‑99 (MQ=1)
   GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           >  1:2383835/1‑101 (MQ=1)
   GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:1582320/101‑1 (MQ=1)
   GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:2968462/101‑1 (MQ=1)
    TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:3264107/1‑101 (MQ=1)
    TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  2:3194924/101‑1 (MQ=1)
    TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:2416091/1‑101 (MQ=1)
    TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  1:1906508/101‑1 (MQ=0)
      cCTCCCCCCGCGGGGGCTTGGATCGAAACTTGTCTGACGCCCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCa        <  1:3989326/100‑2 (MQ=0)
      GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCa        >  1:25827/1‑100 (MQ=0)
      GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCa        <  1:3371662/101‑2 (MQ=1)
       CTCCCCCCGCGGGGGCGTGGATCGGAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaa       >  2:143840/1‑99 (MQ=0)
       CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaa       >  2:2610744/1‑99 (MQ=1)
       CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaa       <  2:1595297/101‑3 (MQ=1)
       CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaa       >  1:1713885/1‑99 (MQ=1)
        TCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaag      >  1:4448669/1‑98 (MQ=1)
         CCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaagg     >  2:2021137/1‑97 (MQ=1)
          CCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAATCGGCaagga    >  2:142936/1‑96 (MQ=0)
           CCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaaggac   <  1:887402/101‑7 (MQ=1)
            CCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCaaggaca  >  2:3600663/1‑94 (MQ=1)
                                    |||||||||||||||||||||||||||||||||                                            
GCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1395362‑1395397
.....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAAC  >  NC_014034/1396167‑1396210

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG