New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395434 =	167 (1.100)	40 (0.260)	11/134	20.6	0.20	intergenic (+246/‑685)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396471	158 (0.700)					coding (353/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

AAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................................................................  <  NC_014034/1395476‑1395434 ............................................................................CCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGTGGTGCCCGTCGCCATCACCCGCAGGGCGCGGTTTCGATCCACGCCCCCGCGGG  <  NC_014034/1396471‑1396379                                            |||||||||||||||||||||||||||||||||                                                                                              gccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGG                                                                      >  2:2845790/10‑101 (MQ=9)  ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTCCGCCGTTTCGATCCACGCCCCCGCGGGG                                                                     <  1:1919410/93‑1 (MQ=255)  ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                     <  2:1484756/93‑1 (MQ=9)   catagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                                                                    >  1:1183609/8‑101 (MQ=9)   catagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                                                                    <  1:3989154/94‑1 (MQ=9)   catagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                                                                    <  1:3883911/94‑1 (MQ=9)    atagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGGACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                                                                   <  1:2174811/95‑1 (MQ=9)    atagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                                                                   >  2:1762535/7‑101 (MQ=9)    atagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                                                                   <  1:436039/95‑1 (MQ=9)     tagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGA                                                                  >  2:342333/6‑101 (MQ=14)     tagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGA                                                                  >  1:3630964/6‑101 (MQ=14)      agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                 <  1:1833026/97‑1 (MQ=14)      agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                 >  2:2417411/5‑101 (MQ=14)       gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                <  2:2873308/98‑1 (MQ=14)        ccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                               <  1:468869/99‑1 (MQ=14)         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGGGCGA                                                              >  1:56397/2‑101 (MQ=14)         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGc                                                              >  2:792784/2‑100 (MQ=14)         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGc                                                              >  2:3333316/2‑100 (MQ=14)         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                              >  2:3583575/2‑101 (MQ=14)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTGCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  2:3153404/101‑1 (MQ=14)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  2:718507/101‑1 (MQ=31)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  1:2650750/101‑1 (MQ=31)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  1:2445558/101‑1 (MQ=31)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  2:641787/101‑1 (MQ=31)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  2:415815/101‑1 (MQ=31)          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                             <  1:3645184/101‑1 (MQ=31)           TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg                                                            >  1:2586091/1‑100 (MQ=11)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgg                                                           <  1:2296684/101‑3 (MQ=1)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC                                                          >  2:692918/1‑101 (MQ=1)              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGCTCCACGCCCCCGCGGGGGGAGCGACGGCg                                                         >  2:335210/1‑100 (MQ=0)              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCg                                                         >  2:2506944/1‑100 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCga                                                        >  2:3926521/1‑99 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgat                                                       >  1:3737428/1‑98 (MQ=0)                 GATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatg                                                      >  1:251580/1‑97 (MQ=0)                 GATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatg                                                      >  2:3287465/1‑97 (MQ=0)                  ATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgt                                                     >  1:3226878/1‑96 (MQ=0)                   TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtg                                                    <  1:1482250/101‑7 (MQ=0)                   TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtg                                                    >  2:1225903/1‑95 (MQ=0)                    CCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtga                                                   >  1:3582224/1‑94 (MQ=0)                    CCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtga                                                   >  1:3302014/1‑94 (MQ=0)                                                                     tccgatCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGTGGTGCCCGTCGCCCTCACCCGCAGGGCGCGGTTTCGATCCACGCCCCCGCGGG  <  2:3300561/95‑1 (MQ=0)                                            |||||||||||||||||||||||||||||||||                                                                                              AAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................................................................  <  NC_014034/1395476‑1395434 ............................................................................CCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGTGGTGCCCGTCGCCATCACCCGCAGGGCGCGGTTTCGATCCACGCCCCCGCGGG  <  NC_014034/1396471‑1396379 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG