New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395465	184 (1.250)	54 (0.370)	15/130	17.4	0.24	intergenic (+277/‑654)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396968 =	163 (0.720)					coding (850/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.....................................................................................  >  NC_014034/1395424‑1395465 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGT  >  NC_014034/1396968‑1397017                                           |||||||||||||||||||||||||||||||||||                                                   gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  1:916614/91‑1 (MQ=0) gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            >  2:1007626/11‑101 (MQ=0) gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  2:3687143/91‑1 (MQ=0) gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            >  2:3743997/11‑101 (MQ=0) gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  1:2550843/91‑1 (MQ=0) gggctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCNCCCCCCGCGGGGGCGTG                            >  2:1749389/11‑101 (MQ=0)   gctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          >  2:2621549/9‑101 (MQ=0)   gctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          <  1:1938211/93‑1 (MQ=0)   gctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          >  2:56384/9‑101 (MQ=0)    ctcgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                         >  2:1682245/8‑101 (MQ=1)      cgatcGTCGCTCCGCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCCGGGGCGTGGATCG                       >  1:2985795/6‑101 (MQ=0)      cgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:3918276/96‑1 (MQ=1)      cgatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:4019023/96‑1 (MQ=1)      cgatcGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:3117374/96‑1 (MQ=0)       gatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                      >  1:1667870/5‑101 (MQ=1)        atcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                     <  2:4081690/98‑1 (MQ=1)        atcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                     <  2:179521/98‑1 (MQ=1)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGGCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAC                   >  1:154387/2‑101 (MQ=0)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                   <  1:1490834/100‑1 (MQ=1)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                   >  2:528679/2‑101 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA                  >  1:2845997/1‑101 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT                 >  1:1050776/1‑101 (MQ=1)            TCGCCCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT                 <  2:3141720/101‑1 (MQ=1)             nnncCCNCCCGCGGGGGNGTGGAGCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                <  2:1829794/97‑1 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                >  2:3226649/1‑101 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                <  1:561494/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               >  2:1344831/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               >  1:1178523/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  2:4013093/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  1:4028589/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  2:297723/101‑1 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAG              >  2:523480/1‑101 (MQ=1)                cCCCCCCGCGGGGGCGTGGATCGAATCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC             <  1:3592749/100‑1 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC             >  1:3568041/1‑101 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCAGC             >  2:1310785/1‑101 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCT            >  2:359510/1‑101 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCT            <  1:2797709/101‑1 (MQ=1)                  CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           >  2:272432/1‑100 (MQ=1)                  CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           <  1:3221170/101‑2 (MQ=1)                  CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           >  2:1816402/1‑100 (MQ=1)                    CCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtga         >  2:2864131/1‑98 (MQ=1)                     CCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgac        >  2:1151090/1‑97 (MQ=1)                      CGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgacc       <  2:3158712/101‑6 (MQ=1)                      CGCGGGGGCGTGGAGCGAACCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgacc       <  1:1939619/101‑6 (MQ=0)                        CGGGGGCGTGGGTCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgc     <  2:1293541/101‑8 (MQ=0)                        CGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgc     >  2:2978056/1‑94 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCctgaccgca    >  2:3850219/1‑92 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:3120593/1‑93 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:547710/1‑93 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    <  2:3183226/101‑9 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    <  2:1236207/101‑9 (MQ=0)                         GGGGGCGTGGATCGAAACCTATGAGGGCTGGAGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:3982663/1‑93 (MQ=0)                           GGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgcatc  >  2:364992/1‑91 (MQ=0)                           GGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgcatc  <  2:1784018/101‑11 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                                   GTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.....................................................................................  >  NC_014034/1395424‑1395465 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGT  >  NC_014034/1396968‑1397017 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG