New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395531	270 (1.840)	19 (0.130)	7/130	23.2	0.08	intergenic (+343/‑588)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1397903 =	144 (0.640)					intergenic (+207/+1691)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

CTGGTAACGTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1395490‑1395531 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946                                           |||||||||||||||||||||||||||||||||||                                             ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      >  2:3669242/11‑101 (MQ=12) ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:2758915/91‑1 (MQ=12) ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:826368/91‑1 (MQ=12) tggcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:3077343/91‑1 (MQ=12)  tgcgcgttgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                     <  2:880848/92‑1 (MQ=2)  gccgggctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                     >  2:330869/10‑101 (MQ=17)   gcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:1048791/93‑1 (MQ=17)   gcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:1433172/9‑101 (MQ=17)    cgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:3560021/94‑1 (MQ=17)     gcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:268709/95‑1 (MQ=17)     gcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:861278/95‑1 (MQ=17)     gcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCAAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:833335/95‑1 (MQ=17)      cgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  2:2000211/6‑101 (MQ=17)      cgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:100076/96‑1 (MQ=17)      cgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:1872863/96‑1 (MQ=17)      cgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:3879924/96‑1 (MQ=17)       gctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:3182794/97‑1 (MQ=32)        ctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGCAA               >  2:3778344/4‑101 (MQ=14)        ctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:3357659/98‑1 (MQ=31)        ctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:1246216/98‑1 (MQ=31)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:3267875/99‑1 (MQ=11)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:2262273/99‑1 (MQ=11)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  1:692998/3‑101 (MQ=11)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             <  1:3510966/100‑2 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             <  2:3694717/100‑2 (MQ=1)           GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACct            <  1:1866704/101‑3 (MQ=1)            gCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcta           <  1:583479/100‑4 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGCAACcta           >  2:1509462/1‑98 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGTTCCGCAATCGGCCGGGCTCGATCGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          >  1:762208/1‑97 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  1:4131833/101‑5 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:70453/101‑5 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  1:523838/101‑5 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:2648117/101‑5 (MQ=1)             CGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:2621083/101‑5 (MQ=0)              cccCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  2:120259/98‑1 (MQ=0)              cCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  1:4162221/100‑1 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAactatg         >  2:1589147/1‑95 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        >  2:1287393/1‑101 (MQ=1)                cCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      <  2:1206801/100‑3 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      >  2:2805164/1‑99 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      >  2:3734982/1‑99 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     <  1:959962/101‑4 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     >  1:495044/1‑98 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACCTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     <  1:3735235/101‑4 (MQ=12)                  CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    >  2:1938082/1‑97 (MQ=0)                   CCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggc   <  2:1257717/101‑6 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  2:1836575/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  2:1676612/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  1:3258850/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  1:616598/101‑7 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                             CTGGTAACGTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1395490‑1395531 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG