New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395832 =	150 (1.010)	35 (0.230)	9/132	21.8	0.17	intergenic (+644/‑287)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397001	193 (0.850)					coding (883/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1395875‑1395832 ..............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGG  <  NC_014034/1397001‑1396961                                             ||||||||||||||||||||||||||||||||||                                          ggaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGG                    >  2:675572/6‑101 (MQ=0) ggaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGG                    >  2:3301589/6‑101 (MQ=0)  gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG                   >  2:278165/5‑101 (MQ=0)  gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG                   >  2:3784510/5‑101 (MQ=0)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                 >  2:2645069/3‑101 (MQ=0)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                 <  1:19679/99‑1 (MQ=0)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                 <  1:2423335/99‑1 (MQ=0)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                 >  1:3050161/3‑101 (MQ=0)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                >  2:2925726/2‑101 (MQ=0)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                <  1:861629/100‑1 (MQ=0)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                >  2:3746239/2‑101 (MQ=0)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                <  1:123665/100‑1 (MQ=0)      CGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:3123024/101‑1 (MQ=0)      CGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:280896/101‑1 (MQ=0)       GGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAG              >  1:3503333/1‑101 (MQ=0)        gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  2:1451528/4‑101 (MQ=0)        gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCACTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  1:826396/4‑101 (MQ=0)         caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG            >  2:3831300/3‑101 (MQ=1)         caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG            <  2:734698/99‑1 (MQ=1)         caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG            >  2:195485/3‑101 (MQ=1)          aCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:2790/100‑1 (MQ=1)           CAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          >  2:1205994/1‑101 (MQ=1)            AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACt         >  2:484907/1‑100 (MQ=1)            AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC         >  2:4385113/1‑101 (MQ=1)            AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACt         >  1:1414330/1‑100 (MQ=1)              TTTCGATCCCCGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtcc       <  1:3976466/101‑4 (MQ=0)              TTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtcc       <  2:3274598/101‑4 (MQ=0)               TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccg      >  1:2480993/1‑97 (MQ=0)               TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccg      >  2:781863/1‑97 (MQ=0)               TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccc      >  2:3570191/1‑97 (MQ=0)                TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgt     <  2:1200012/101‑6 (MQ=0)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtc    <  2:1155358/101‑7 (MQ=0)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtc    >  1:2059839/1‑95 (MQ=0)                  GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtcc   >  1:3518542/1‑94 (MQ=0)                   ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtccc  <  2:946460/101‑9 (MQ=0)                                             ||||||||||||||||||||||||||||||||||                                          ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1395875‑1395832 ..............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGG  <  NC_014034/1397001‑1396961 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG