New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395997	193 (1.260)	48 (0.310)	10/136	21.6	0.22	intergenic (+809/‑122)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396507 =	140 (0.620)					coding (389/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..............................................................................  >  NC_014034/1395953‑1395997 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGAC  >  NC_014034/1396507‑1396552                                              ||||||||||||||||||||||||||||||||                                               gcgctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:2179123/91‑1 (MQ=255)  cgctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGA                       <  1:1709058/92‑1 (MQ=9)  cgctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:4241426/92‑1 (MQ=9)   gctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  1:4320547/9‑101 (MQ=9)   gctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGAT                      <  1:2454788/93‑1 (MQ=9)    ctggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:4200764/94‑1 (MQ=9)    ctggacgTGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:3153628/94‑1 (MQ=255)     tggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  2:2563463/7‑101 (MQ=9)     tggacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  2:3049940/7‑101 (MQ=9)       gacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:13565/97‑1 (MQ=14)       gacgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGGGGATCGca                  >  2:72521/5‑99 (MQ=9)         cgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  1:3037067/3‑101 (MQ=14)         cgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  1:3482529/99‑1 (MQ=14)         cgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  2:2937761/3‑101 (MQ=14)         cgTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  2:1618703/99‑1 (MQ=14)          gTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa               >  1:2645240/2‑100 (MQ=14)          gTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa               <  2:650/100‑2 (MQ=14)          gTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGACACTCCCCCCGCGGGGGCGTGGATCGAGACa               >  2:3567800/2‑100 (MQ=255)           TGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACag              >  1:950873/1‑99 (MQ=14)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGC             <  2:3813639/101‑1 (MQ=11)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGACACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGAGGATCGAAACAGCTTT          >  2:299923/1‑101 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         <  1:2194230/101‑1 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  1:3327596/1‑101 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  1:4395086/1‑101 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  2:2609701/1‑101 (MQ=1)                 ccCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  1:1303019/99‑2 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  2:352585/101‑2 (MQ=1)                 CTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  2:1938432/101‑2 (MQ=1)                  cCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  2:895641/100‑3 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3831553/1‑99 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  2:826314/1‑99 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:1529739/1‑99 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3160135/1‑99 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3578182/1‑99 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:672885/1‑99 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  1:969584/101‑3 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  2:1220077/101‑3 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaat      <  2:2316070/101‑4 (MQ=0)                   CCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCCCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaat      <  1:3105355/101‑4 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  1:4089173/1‑97 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  2:3470297/1‑97 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  1:1451635/1‑97 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgg    <  1:1764724/101‑6 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgg    >  2:1203275/1‑96 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatggg   <  2:298225/101‑7 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatggg   <  1:1942270/101‑7 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgggg  <  1:610752/101‑8 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgggg  <  1:3018908/101‑8 (MQ=0)                                              ||||||||||||||||||||||||||||||||                                               GGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..............................................................................  >  NC_014034/1395953‑1395997 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGAC  >  NC_014034/1396507‑1396552 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG