New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396064	143 (0.930)	46 (0.300)	6/136	24.9	0.23	intergenic (+876/‑55)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396703 =	171 (0.760)					coding (585/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CTCACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1396018‑1396064 ...............................................................................ATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGTCCCTC  >  NC_014034/1396703‑1396747                                                ||||||||||||||||||||||||||||||||                                              aacaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGG                         >  2:2627160/11‑101 (MQ=0) aacaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGG                         >  2:1891991/11‑101 (MQ=0) aacaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGG                         <  1:3393016/91‑1 (MQ=0)  acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        >  1:138784/10‑101 (MQ=0)  acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        >  2:3044399/10‑101 (MQ=0)  acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        <  1:3616176/92‑1 (MQ=0)   caccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCG                       <  1:1823528/93‑1 (MQ=0)       gataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                   >  1:1521822/5‑101 (MQ=1)       gataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGA                   >  1:3149864/5‑101 (MQ=0)        ataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  2:2542467/4‑101 (MQ=1)         taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:3740394/99‑1 (MQ=1)         taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGATC                 >  2:1365416/3‑101 (MQ=1)          aCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  1:965237/2‑101 (MQ=1)          aCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGATCG                >  1:2096492/2‑101 (MQ=1)           CCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  2:2244920/101‑1 (MQ=1)           CCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  1:1698980/1‑101 (MQ=1)            CGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              >  2:4257819/1‑101 (MQ=1)             GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  2:972898/101‑1 (MQ=1)              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  1:2229905/101‑1 (MQ=1)              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  2:4432800/101‑1 (MQ=1)               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg           >  1:2208601/1‑100 (MQ=1)                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgg          >  1:273419/1‑99 (MQ=11)                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgg          >  2:3178708/1‑99 (MQ=11)                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgg          <  2:2725824/101‑3 (MQ=11)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggt         <  2:3231823/101‑4 (MQ=11)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggt         <  2:2497584/101‑4 (MQ=11)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggg         >  2:3565193/1‑98 (MQ=11)                  GCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        >  1:4400119/1‑97 (MQ=11)                  GCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        <  1:1717244/101‑5 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgt       <  1:1672519/101‑6 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgc       >  2:1456392/1‑96 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggggt       >  1:1884655/1‑96 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggcgt       >  2:1969851/1‑96 (MQ=11)                    TCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTC      <  2:181173/101‑1 (MQ=11)                    TCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTC      >  2:1742868/1‑101 (MQ=11)                    TCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTC      <  2:308167/101‑1 (MQ=11)                     CCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCC     <  1:4238957/101‑1 (MQ=11)                     CCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCC     <  1:3283707/101‑1 (MQ=11)                      CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCa    <  1:3026767/101‑2 (MQ=2)                       CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggggtccag   >  2:1393504/1‑92 (MQ=2)                       CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCag   <  2:2083408/101‑3 (MQ=2)                       CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCag   <  1:3681798/101‑3 (MQ=2)                       CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCag   <  1:3561874/101‑3 (MQ=2)                       CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCag   <  2:4188379/101‑3 (MQ=2)                        CCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCagc  <  1:1909549/101‑4 (MQ=2)                        CCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCagc  <  1:2759917/101‑4 (MQ=2)                                                ||||||||||||||||||||||||||||||||                                              CTCACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1396018‑1396064 ...............................................................................ATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGTCCCTC  >  NC_014034/1396703‑1396747 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG