New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396131	146 (0.950)	43 (0.280)	6/136	24.9	0.23	coding (13/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396507 =	140 (0.620)					coding (389/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..............................................................................  >  NC_014034/1396089‑1396131 ...........................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGAC  >  NC_014034/1396507‑1396552                                            ||||||||||||||||||||||||||||||||                                               gctggacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  1:4320547/11‑101 (MQ=9) gctggacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGAT                      <  1:2454788/91‑1 (MQ=9)  ctggacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:4200764/92‑1 (MQ=9)   tggacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  2:2563463/9‑101 (MQ=9)   tggacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  2:3049940/9‑101 (MQ=9)     gacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:13565/95‑1 (MQ=14)     gacgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGGGGATCGca                  >  2:72521/7‑99 (MQ=9)       cgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  2:1618703/97‑1 (MQ=14)       cgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  1:3037067/5‑101 (MQ=14)       cgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  1:3482529/97‑1 (MQ=14)       cgtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  2:2937761/5‑101 (MQ=14)        gtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa               >  1:2645240/4‑100 (MQ=14)        gtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa               <  2:650/98‑2 (MQ=14)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACag              >  1:950873/3‑99 (MQ=14)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGC             <  2:3813639/100‑1 (MQ=11)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGACACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGAGGATCGAAACAGCTTT          >  2:299923/1‑101 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  1:4395086/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  2:2609701/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         >  1:3327596/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTC         <  1:2194230/101‑1 (MQ=1)               ccCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  1:1303019/99‑2 (MQ=0)               CTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  2:352585/101‑2 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCa        <  2:1938432/101‑2 (MQ=1)                cCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  2:895641/100‑3 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3831553/1‑99 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  2:1220077/101‑3 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       <  1:969584/101‑3 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:672885/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  2:826314/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3578182/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:1529739/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaa       >  1:3160135/1‑99 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaat      <  2:2316070/101‑4 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCCCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaat      <  1:3105355/101‑4 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  1:1451635/1‑97 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  1:4089173/1‑97 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatg     >  2:3470297/1‑97 (MQ=0)                   CCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgg    <  1:1764724/101‑6 (MQ=0)                   CCCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgg    >  2:1203275/1‑96 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatggg   <  1:1942270/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatggg   <  2:298225/101‑7 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgggg  <  1:3018908/101‑8 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTACACCGGGGCTCTGGTCACGGTTTGGGACGGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCaatgggg  <  1:610752/101‑8 (MQ=0)                                            ||||||||||||||||||||||||||||||||                                               TGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..............................................................................  >  NC_014034/1396089‑1396131 ...........................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGAC  >  NC_014034/1396507‑1396552 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG