New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396167 =	143 (0.940)	24 (0.160)	3/134	27.7	0.14	coding (49/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397066	158 (0.700)					coding (948/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.....................................................................  <  NC_014034/1396210‑1396167 .............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGA  <  NC_014034/1397066‑1397031                                             |||||||||||||||||||||||||||||||||                                     tgtccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGG              <  2:3600663/94‑1 (MQ=1)  gtccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG             >  1:887402/7‑101 (MQ=1)    ccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG           <  2:2021137/97‑1 (MQ=1)     cttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGA          <  1:4448669/98‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG         <  1:1713885/99‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG         <  2:2610744/99‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG         >  2:1595297/3‑101 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTCCGATCCACGCCCCCGCGGGGGGAG         <  2:143840/99‑1 (MQ=0)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGGGCGTCAGACAAGTTTCGATCCAAGCCCCCGCGGGGGGAGg        >  1:3989326/2‑100 (MQ=0)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC        >  1:3371662/2‑101 (MQ=1)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC        <  1:25827/100‑1 (MQ=0)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTTAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA      >  1:1906508/1‑101 (MQ=0)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA      <  2:3264107/101‑1 (MQ=1)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA      >  2:3194924/1‑101 (MQ=1)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA      <  2:2416091/101‑1 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC     >  2:2968462/4‑101 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC     >  2:1582320/4‑101 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC     <  1:2383835/98‑1 (MQ=1)           gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc    <  1:2086180/99‑2 (MQ=1)           gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc    >  1:1900234/3‑100 (MQ=1)            aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACct   >  2:3749483/2‑99 (MQ=1)            aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACct   >  2:558154/2‑99 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGTCTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACctg  <  1:320932/101‑4 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACctg  <  2:4283484/101‑4 (MQ=1)                                             |||||||||||||||||||||||||||||||||                                     GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.....................................................................  <  NC_014034/1396210‑1396167 .............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGA  <  NC_014034/1397066‑1397031 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG