New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396167 =	143 (0.940)	28 (0.180)	4/134	26.6	0.16	coding (49/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397665	152 (0.670)					coding (1547/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................  <  NC_014034/1396210‑1396167 .............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGAT  <  NC_014034/1397665‑1397629                                             |||||||||||||||||||||||||||||||||                                      tgtccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGG               <  2:3600663/94‑1 (MQ=1)  gtccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG              >  1:887402/7‑101 (MQ=1)    ccttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG            <  2:2021137/97‑1 (MQ=1)     cttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGA           <  1:4448669/98‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG          <  1:1713885/99‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG          <  2:2610744/99‑1 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG          >  2:1595297/3‑101 (MQ=1)      ttGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTCCGATCCACGCCCCCGCGGGGGGAG          <  2:143840/99‑1 (MQ=0)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGGGCGTCAGACAAGTTTCGATCCAAGCCCCCGCGGGGGGAGg         >  1:3989326/2‑100 (MQ=0)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC         >  1:3371662/2‑101 (MQ=1)       tGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC         <  1:25827/100‑1 (MQ=0)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTTAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA       >  1:1906508/1‑101 (MQ=0)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA       <  2:3264107/101‑1 (MQ=1)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA       >  2:3194924/1‑101 (MQ=1)         CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA       <  2:2416091/101‑1 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC      >  2:2968462/4‑101 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC      >  2:1582320/4‑101 (MQ=1)          cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC      <  1:2383835/98‑1 (MQ=1)           gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC     <  1:2086180/99‑1 (MQ=1)           gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC     >  1:1900234/3‑101 (MQ=1)            aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCt    >  2:3749483/2‑100 (MQ=1)            aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCt    >  2:558154/2‑100 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGTCTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtg   <  1:320932/101‑3 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtg   <  2:4283484/101‑3 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtgt  <  2:2415830/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtgt  <  1:682259/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtgt  <  1:4281211/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCtgt  >  2:281843/1‑98 (MQ=1)                                             |||||||||||||||||||||||||||||||||                                      GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................  <  NC_014034/1396210‑1396167 .............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGAT  <  NC_014034/1397665‑1397629 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG