New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396333	129 (0.880)	59 (0.400)	19/130	15.1	0.29	coding (215/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396968 =	163 (0.720)					coding (850/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GAACTTCTGTTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.....................................................................................  >  NC_014034/1396290‑1396333 ...............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGT  >  NC_014034/1396968‑1397017                                             |||||||||||||||||||||||||||||||||||                                                   ccgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCG                              <  1:3916107/91‑1 (MQ=0) ccgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCG                              <  2:494992/91‑1 (MQ=0)  cgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGg                             >  1:988666/10‑100 (MQ=0)  cgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGT                             <  2:2620542/92‑1 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  1:916614/93‑1 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            >  2:1007626/9‑101 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  2:3687143/93‑1 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            >  2:3743997/9‑101 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                            <  1:2550843/93‑1 (MQ=0)   gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCNCCCCCCGCGGGGGCGTG                            >  2:1749389/9‑101 (MQ=0)    ggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGGGG                           >  1:2369543/8‑101 (MQ=0)     gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          >  2:56384/7‑101 (MQ=0)     gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          >  2:2621549/7‑101 (MQ=0)     gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                          <  1:1938211/95‑1 (MQ=0)      ctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                         >  2:1682245/6‑101 (MQ=1)        cgaTCGTCGCTCCGCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCCGGGGCGTGGATCG                       >  1:2985795/4‑101 (MQ=0)        cgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:3918276/98‑1 (MQ=1)        cgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:4019023/98‑1 (MQ=1)        cgaTCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                       <  1:3117374/98‑1 (MQ=0)         gaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                      >  1:1667870/3‑101 (MQ=1)          aTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                     <  2:179521/100‑1 (MQ=1)          aTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                     <  2:4081690/100‑1 (MQ=1)            CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGGCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAC                   >  1:154387/1‑101 (MQ=0)            CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                   <  1:1490834/101‑1 (MQ=1)            CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                   >  2:528679/1‑101 (MQ=1)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA                  >  1:2845997/1‑101 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT                 >  1:1050776/1‑101 (MQ=1)              TCGCCCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT                 <  2:3141720/101‑1 (MQ=1)               nnncCCNCCCGCGGGGGNGTGGAGCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                <  2:1829794/97‑1 (MQ=0)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                >  2:3226649/1‑101 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC                <  1:561494/101‑1 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               >  2:1344831/1‑101 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               >  1:1178523/1‑101 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  1:4028589/101‑1 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  2:4013093/101‑1 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCA               <  2:297723/101‑1 (MQ=1)                 CTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAG              >  2:523480/1‑101 (MQ=1)                  cCCCCCCGCGGGGGCGTGGATCGAATCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC             <  1:3592749/100‑1 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC             >  1:3568041/1‑101 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCAGC             >  2:1310785/1‑101 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCT            <  1:2797709/101‑1 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCT            >  2:359510/1‑101 (MQ=1)                    CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           >  2:272432/1‑100 (MQ=1)                    CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           >  2:1816402/1‑100 (MQ=1)                    CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTt           <  1:3221170/101‑2 (MQ=1)                      CCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtga         >  2:2864131/1‑98 (MQ=1)                       CCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgac        >  2:1151090/1‑97 (MQ=1)                        CGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgacc       <  2:3158712/101‑6 (MQ=1)                        CGCGGGGGCGTGGAGCGAACCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgacc       <  1:1939619/101‑6 (MQ=0)                          CGGGGGCGTGGGTCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgc     <  2:1293541/101‑8 (MQ=0)                          CGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgc     >  2:2978056/1‑94 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCctgaccgca    >  2:3850219/1‑92 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    <  2:3183226/101‑9 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:3120593/1‑93 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    <  2:1236207/101‑9 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:547710/1‑93 (MQ=0)                           GGGGGCGTGGATCGAAACCTATGAGGGCTGGAGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgca    >  1:3982663/1‑93 (MQ=0)                             GGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgcatc  >  2:364992/1‑91 (MQ=0)                             GGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTtgaccgcatc  <  2:1784018/101‑11 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                                   GAACTTCTGTTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.....................................................................................  >  NC_014034/1396290‑1396333 ...............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGT  >  NC_014034/1396968‑1397017 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG