New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396334	129 (0.860)	44 (0.290)	7/132	23.5	0.22	coding (216/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396639 =	175 (0.770)					coding (521/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ACTTCTGTTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..............................................................................  >  NC_014034/1396292‑1396334 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATA  >  NC_014034/1396639‑1396682                                            ||||||||||||||||||||||||||||||||||                                             aaggccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:486957/11‑101 (MQ=0) aaggccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:1571544/11‑101 (MQ=0)  aggccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                     >  2:4069680/10‑101 (MQ=0)  aggccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:2635088/92‑1 (MQ=0)   ggccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:1704250/93‑1 (MQ=1)    gccggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:2849624/94‑1 (MQ=1)      cggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:916137/96‑1 (MQ=1)      cggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  2:2618932/6‑101 (MQ=1)      cggtgGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:2742676/96‑1 (MQ=1)       ggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  1:2108022/5‑101 (MQ=1)       ggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:2115785/5‑101 (MQ=1)       ggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:3439544/97‑1 (MQ=1)       ggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  1:3928751/5‑101 (MQ=1)       ggtgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGGGGATCGAA                >  2:4089049/5‑101 (MQ=1)        gtgGTCGCCCCCCCCGCGGGGGCGCGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:3480137/98‑1 (MQ=0)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:1484473/100‑2 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:4064549/100‑2 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  1:1300839/100‑2 (MQ=1)          gGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTCCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:2891007/100‑2 (MQ=0)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACta            <  2:3646860/101‑3 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCCGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaaat           >  2:883853/1‑97 (MQ=0)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT           <  2:486905/101‑1 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT           <  2:2611957/101‑1 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG          <  2:3549457/101‑1 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG          <  2:3336388/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC         <  1:308799/101‑1 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC         <  1:4034304/101‑1 (MQ=1)               cgCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        <  2:1316548/99‑2 (MQ=0)               CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        <  1:1370187/101‑2 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        <  1:3095245/101‑2 (MQ=1)                cCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  1:3237698/100‑3 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       >  2:353153/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  2:386437/101‑3 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       >  2:415182/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  2:1273044/101‑3 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       >  2:617795/1‑99 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      <  1:143049/101‑4 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      <  1:954931/101‑4 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggc     >  2:2200738/1‑97 (MQ=0)                   CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct    >  1:307041/1‑96 (MQ=0)                   CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct    <  1:2672591/101‑6 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctc   >  1:1615468/1‑95 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctc   >  2:542077/1‑95 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg  <  1:1700511/101‑8 (MQ=0)                                            ||||||||||||||||||||||||||||||||||                                             ACTTCTGTTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..............................................................................  >  NC_014034/1396292‑1396334 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATA  >  NC_014034/1396639‑1396682 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG