New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396370 =	123 (0.850)	60 (0.410)	14/128	17.8	0.28	coding (252/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397000	188 (0.830)					coding (882/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GCAGGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...................................................................................  <  NC_014034/1396411‑1396370 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGC  <  NC_014034/1397000‑1396954                                           ||||||||||||||||||||||||||||||||||||                                                tggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGG                          >  1:4196191/11‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         >  1:3584246/10‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         >  1:1648890/10‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         >  1:1841803/10‑101 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        >  2:116273/9‑101 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        <  1:698258/93‑1 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        <  1:4081950/93‑1 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        >  2:3869892/9‑101 (MQ=0)   gtcatcaGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATGCGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        <  2:1939490/94‑1 (MQ=0)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  1:2389038/95‑1 (MQ=0)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  1:2976215/95‑1 (MQ=0)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCGGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  1:2160933/95‑1 (MQ=0)      atcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                     >  1:2511230/6‑101 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGg                    >  1:48787/5‑100 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                    <  1:4282289/97‑1 (MQ=1)        caaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                   >  1:1418259/4‑101 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  <  1:332353/99‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  <  2:484484/99‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  >  1:4045844/3‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGGGCGAC                 >  1:4195105/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 <  2:3186089/100‑1 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 >  2:2601028/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 <  1:1662818/100‑1 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 >  2:1389882/2‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC                <  2:2797503/101‑1 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCg               <  2:979091/101‑2 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCgc              <  2:543366/101‑3 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCgc              <  1:2621254/101‑3 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACCGCGC            >  1:3512558/1‑101 (MQ=0)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            <  1:3978592/101‑1 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  1:447186/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  2:2559064/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  1:1231635/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  2:1045072/1‑101 (MQ=1)                GATCCAGGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           <  1:727353/101‑1 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           <  2:1490729/101‑1 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           >  2:2228383/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  1:1206894/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  2:3510725/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          >  2:2782328/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  2:2291377/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  2:2262128/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          >  2:1048408/1‑101 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGa         <  2:1318794/101‑2 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGa         >  2:1962375/1‑100 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  1:599804/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  1:616963/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  2:3899311/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  2:4401344/1‑99 (MQ=1)                    CACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGaca       >  2:3121347/1‑98 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGaca       <  1:1586227/101‑4 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaa      >  2:2603677/1‑97 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaa      <  2:3583998/101‑5 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    >  2:2565099/1‑95 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    <  1:487021/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    <  1:2818788/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    <  1:2507107/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    >  1:1274619/1‑95 (MQ=0)                        CCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaaga   <  2:2486996/101‑8 (MQ=0)                         CCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaagat  <  2:3413524/101‑9 (MQ=0)                                           ||||||||||||||||||||||||||||||||||||                                                GCAGGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...................................................................................  <  NC_014034/1396411‑1396370 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGC  <  NC_014034/1397000‑1396954 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG