New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396469	155 (1.050)	48 (0.330)	2/130	28.4	0.25	coding (351/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396573 =	136 (0.600)					coding (455/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396426‑1396469 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATTTCGTCGC  >  NC_014034/1396573‑1396615                                             |||||||||||||||||||||||||||||||||||                                            gtaaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGg                       >  1:3404295/8‑100 (MQ=0)  taaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTG                      >  1:3200880/7‑101 (MQ=0)  taaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTG                      <  1:2597790/95‑1 (MQ=0)  taaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTG                      <  1:3264339/95‑1 (MQ=0)   aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                     >  1:1571544/6‑101 (MQ=0)   aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                     >  1:486957/6‑101 (MQ=0)    aggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                    >  2:4069680/5‑101 (MQ=0)    aggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                    <  1:2635088/97‑1 (MQ=0)     ggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:1704250/98‑1 (MQ=1)      gcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  1:2849624/99‑1 (MQ=1)       cCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGAGGTCGCTCCCCCCGCGGGGGCGGGGATCG                 >  1:1340570/2‑101 (MQ=0)        CGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:2618932/1‑101 (MQ=1)        CGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:916137/101‑1 (MQ=1)        CGGTGGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:2742676/101‑1 (MQ=1)         ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  1:3928751/4‑101 (MQ=1)         ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:2115785/4‑101 (MQ=1)         ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  1:2108022/4‑101 (MQ=1)         ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  1:3439544/98‑1 (MQ=1)         ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGGGGATCGAA               >  2:4089049/4‑101 (MQ=1)          gtGGTCGCCCCCCCCGCGGGGGCGCGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  1:3480137/99‑1 (MQ=0)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt            <  2:1484473/101‑2 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt            <  2:4064549/101‑2 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt            <  1:1300839/101‑2 (MQ=1)            GGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTCCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt            <  2:2891007/101‑2 (MQ=0)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACta           <  2:3646860/101‑3 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCCGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaaat          >  2:883853/1‑97 (MQ=0)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT          <  2:486905/101‑1 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT          <  2:2611957/101‑1 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATg         <  2:3549457/101‑2 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATg         <  2:3336388/101‑2 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgc        <  1:308799/101‑3 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgc        <  1:4034304/101‑3 (MQ=1)                 cgCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgct       <  2:1316548/99‑4 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgct       <  1:3095245/101‑4 (MQ=1)                 CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgct       <  1:1370187/101‑4 (MQ=1)                  cCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      <  1:3237698/100‑5 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      >  2:617795/1‑97 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      >  2:415182/1‑97 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      <  2:386437/101‑5 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      >  2:353153/1‑97 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctg      <  2:1273044/101‑5 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctgg     <  1:954931/101‑6 (MQ=0)                   CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctgg     <  1:143049/101‑6 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctggc    >  2:2200738/1‑95 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctggct   >  1:307041/1‑94 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctggct   <  1:2672591/101‑8 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctggctc  >  1:1615468/1‑93 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATgctggctc  >  2:542077/1‑93 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                            GGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396426‑1396469 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATTTCGTCGC  >  NC_014034/1396573‑1396615 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG