New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396471160 (1.040)39 (0.250) 3/136 28.0 0.22 coding (353/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397166 = 120 (0.530)coding (1048/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGCGGGGGCGTGGATCGAAACCGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGG............................................................................  >  NC_014034/1396379‑1396471
.............................................................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTGTCTGCCAC  >  NC_014034/1397166‑1397209
                                                                                             ||||||||||||||||||||||||||||||||                                            
CCCGCGGGGGCGTGGATCGAAACCGCGCCCTGCGGGTGAGGGCGACGGGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGatcgga                                                                      >  2:3300561/1‑95 (MQ=0)
                                                 tcacatcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  1:3302014/91‑1 (MQ=0)
                                                 tcacatcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  1:3582224/91‑1 (MQ=0)
                                                  cacatcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGA                    >  1:1482250/10‑101 (MQ=0)
                                                  cacatcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  2:1225903/92‑1 (MQ=0)
                                                   acatcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:3226878/93‑1 (MQ=0)
                                                    catcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  2:3287465/94‑1 (MQ=0)
                                                    catcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  1:251580/94‑1 (MQ=0)
                                                     atcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:3737428/95‑1 (MQ=0)
                                                      tcgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  2:3926521/96‑1 (MQ=1)
                                                       cgccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  2:2506944/97‑1 (MQ=1)
                                                       cgccGTCGCTCCCCCCGCGGGGGCGTGGAGCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  2:335210/97‑1 (MQ=0)
                                                        gccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  2:692918/98‑1 (MQ=1)
                                                         ccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             >  1:2296684/3‑101 (MQ=1)
                                                          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa            <  1:2586091/100‑2 (MQ=11)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  2:415815/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  1:3645184/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  2:641787/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  1:2650750/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  1:2445558/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  2:718507/1‑99 (MQ=31)
                                                           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGCAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat           >  2:3153404/1‑99 (MQ=14)
                                                            gCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATG          <  2:3333316/100‑1 (MQ=14)
                                                            gCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATG          <  2:792784/100‑1 (MQ=14)
                                                            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATG          <  2:3583575/101‑1 (MQ=14)
                                                            TCGCCCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATG          <  1:56397/101‑1 (MQ=14)
                                                             CGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGg         >  1:468869/1‑100 (MQ=14)
                                                              GCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGgc        >  2:2873308/1‑99 (MQ=14)
                                                               CTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCT       <  2:2417411/101‑1 (MQ=14)
                                                               CTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCT       >  1:1833026/1‑101 (MQ=14)
                                                                TCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTa      <  2:342333/101‑2 (MQ=14)
                                                                TCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTa      <  1:3630964/101‑2 (MQ=14)
                                                                 CCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTat     <  2:1762535/101‑3 (MQ=9)
                                                                 CCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTat     >  1:436039/1‑99 (MQ=9)
                                                                 CCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTCCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTat     >  1:2174811/1‑99 (MQ=9)
                                                                  CCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTatg    >  1:3989154/1‑98 (MQ=9)
                                                                  CCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTatg    >  1:3883911/1‑98 (MQ=9)
                                                                  CCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTatg    <  1:1183609/101‑4 (MQ=9)
                                                                   CCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTatgg   >  2:1484756/1‑97 (MQ=9)
                                                                    CCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTatggc  <  2:2845790/101‑6 (MQ=9)
                                                                                             ||||||||||||||||||||||||||||||||                                            
CCCGCGGGGGCGTGGATCGAAACCGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGG............................................................................  >  NC_014034/1396379‑1396471
.............................................................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTGTCTGCCAC  >  NC_014034/1397166‑1397209

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG