New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396507 =	140 (0.910)	43 (0.280)	6/136	24.9	0.22	coding (389/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397066	162 (0.720)					coding (948/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1396552‑1396507 ..............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGACATCGTC  <  NC_014034/1397066‑1397024                                               ||||||||||||||||||||||||||||||||                                            ccccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGG                      >  1:3018908/8‑101 (MQ=0) ccccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGG                      >  1:610752/8‑101 (MQ=0)  cccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGG                     >  1:1942270/7‑101 (MQ=0)  cccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGG                     >  2:298225/7‑101 (MQ=0)   ccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGG                    >  1:1764724/6‑101 (MQ=0)   ccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGG                    <  2:1203275/96‑1 (MQ=0)    cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   <  1:1451635/97‑1 (MQ=0)    cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   <  2:3470297/97‑1 (MQ=0)    cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   <  1:4089173/97‑1 (MQ=0)     attGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGGGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGG                  >  1:3105355/4‑101 (MQ=0)     attGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGG                  >  2:2316070/4‑101 (MQ=0)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGg                 >  2:895641/3‑100 (MQ=0)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  2:826314/99‑1 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 >  2:1220077/3‑101 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 >  1:969584/3‑101 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:672885/99‑1 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:1529739/99‑1 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:3160135/99‑1 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:3578182/99‑1 (MQ=1)      ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGAGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:3831553/99‑1 (MQ=0)       tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGgg                >  1:1303019/2‑99 (MQ=0)       tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:352585/2‑101 (MQ=1)       tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:1938432/2‑101 (MQ=1)        GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:3327596/101‑1 (MQ=1)        GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:4395086/101‑1 (MQ=1)        GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:2194230/1‑101 (MQ=1)        GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:2609701/101‑1 (MQ=1)         AAAGCTGTTTCGATCCTCGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGTCCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  2:299923/101‑1 (MQ=0)            gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc           >  2:3813639/4‑100 (MQ=11)             ctGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca          <  1:950873/99‑3 (MQ=14)              tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         >  2:650/2‑98 (MQ=14)              tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  1:2645240/100‑4 (MQ=14)               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        <  2:2937761/101‑5 (MQ=14)               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        >  2:1618703/1‑97 (MQ=14)               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        <  1:3037067/101‑5 (MQ=14)               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        >  1:3482529/1‑97 (MQ=14)                 tgCGATCCCCGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtc      <  2:72521/99‑7 (MQ=9)                 TTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtc      >  2:13565/1‑95 (MQ=14)                   CGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtcca    <  2:2563463/101‑9 (MQ=9)                   CGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtcca    <  2:3049940/101‑9 (MQ=9)                    GATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtccag   >  1:4200764/1‑92 (MQ=9)                     ATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtccagc  >  1:2454788/1‑91 (MQ=9)                     ATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtccagc  <  1:4320547/101‑11 (MQ=9)                                               ||||||||||||||||||||||||||||||||                                            GTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1396552‑1396507 ..............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGACATCGTC  <  NC_014034/1397066‑1397024 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG