New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396539	188 (1.240)	23 (0.150)	4/134	26.6	0.14	coding (421/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1434614 =	103 (0.460)					intergenic (‑393/‑565)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1396504‑1396539 .....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATG  >  NC_014034/1434614‑1434657                                     |||||||||||||||||||||||||||||||||                                             cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:4283484/4‑101 (MQ=1) cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGACGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  1:320932/4‑101 (MQ=1)  agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:558154/99‑2 (MQ=1)  agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:3749483/99‑2 (MQ=1)   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            <  1:1900234/100‑3 (MQ=1)   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            >  1:2086180/2‑99 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:2968462/101‑1 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:1582320/101‑1 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           >  1:2383835/1‑101 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:2416091/1‑101 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  2:3194924/101‑1 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:3264107/1‑101 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  1:1906508/101‑1 (MQ=0)       GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGca        >  1:25827/1‑99 (MQ=0)       GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGca        <  1:3371662/101‑3 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGGAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaa       >  2:143840/1‑98 (MQ=0)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaa       <  2:1595297/101‑4 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaa       >  2:2610744/1‑98 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaa       >  1:1713885/1‑98 (MQ=1)         TCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaag      >  1:4448669/1‑97 (MQ=1)          CCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaagg     >  2:2021137/1‑96 (MQ=1)            CCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaaggac   <  1:887402/101‑8 (MQ=1)             CCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGcaaggaca  >  2:3600663/1‑93 (MQ=1)                                     |||||||||||||||||||||||||||||||||                                             CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1396504‑1396539 .....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATG  >  NC_014034/1434614‑1434657 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG