New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396604	134 (0.880)	48 (0.320)	4/134	26.6	0.26	coding (486/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397632 =	137 (0.610)					coding (1514/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396506‑1396604 ....................................................................................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCG  >  NC_014034/1397632‑1397676                                                                                                    |||||||||||||||||||||||||||||||||                                              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAAGTCGCTCCCCCCGCGGNGGCGTGGATCGNAANNA                                                                              >  2:1147041/1‑101 (MQ=1)                                                          attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:2879910/11‑101 (MQ=0)                                                          attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  2:2386524/11‑101 (MQ=0)                                                          attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:4402835/11‑101 (MQ=0)                                                          attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:4186206/91‑1 (MQ=0)                                                           ttggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  2:3119270/92‑1 (MQ=0)                                                            tggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:3989742/9‑101 (MQ=0)                                                            tggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:1302922/9‑101 (MQ=0)                                                            tggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  1:2274427/9‑101 (MQ=0)                                                            tggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  1:2324378/9‑101 (MQ=0)                                                             ggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2994627/94‑1 (MQ=1)                                                             ggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2299695/94‑1 (MQ=1)                                                              gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:3118427/95‑1 (MQ=1)                                                              gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  2:3813060/7‑101 (MQ=1)                                                              gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:4119223/7‑101 (MQ=1)                                                                cccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:3522513/5‑101 (MQ=1)                                                                 ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:1634982/98‑1 (MQ=1)                                                                 ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  2:4063411/98‑1 (MQ=1)                                                                  cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGGCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:3763901/99‑1 (MQ=1)                                                                  cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             >  1:1689437/3‑101 (MQ=1)                                                                  cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             >  1:298260/3‑101 (MQ=1)                                                                  cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:4081188/99‑1 (MQ=1)                                                                  cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGAGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:835095/99‑1 (MQ=1)                                                                  cgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:1177674/99‑1 (MQ=1)                                                                   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGCAACTA            >  2:3437707/2‑101 (MQ=1)                                                                   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA            >  1:278200/2‑101 (MQ=1)                                                                   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA            >  1:2414887/2‑101 (MQ=1)                                                                     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA          <  1:3233515/101‑1 (MQ=1)                                                                     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA          <  2:3379842/101‑1 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  2:717219/1‑99 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  1:168507/1‑99 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        <  1:1729196/101‑3 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        <  1:1925187/101‑3 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  2:1983309/1‑99 (MQ=1)                                                                       GCTCCCCCCGCGGGGGCGTGGAGCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGGCGCTCCCCCCGCGGGGGCGTGGATCGGAACTACAac        >  2:4167770/1‑99 (MQ=0)                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGTTCGAAACTACcccg       >  1:4213785/1‑97 (MQ=0)                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg       >  1:19824/1‑98 (MQ=1)                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg       <  1:1292481/101‑4 (MQ=1)                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCGCCCCCCGCGGGGGCGTGGATCGAACCTAtaccg       >  2:2059702/1‑96 (MQ=0)                                                                         TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg      >  2:2604205/1‑97 (MQ=1)                                                                         TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg      >  1:895726/1‑97 (MQ=1)                                                                           CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg    >  1:195512/1‑95 (MQ=0)                                                                           CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg    >  1:2316220/1‑95 (MQ=0)                                                                            CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  2:3024014/101‑8 (MQ=0)                                                                            CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  1:2117313/101‑8 (MQ=0)                                                                            CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  1:936754/101‑8 (MQ=0)                                                                             CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  2:2555617/101‑9 (MQ=0)                                                                             CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  2:3762607/101‑9 (MQ=0)                                                                             CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  1:2433721/101‑9 (MQ=0)                                                                                                    |||||||||||||||||||||||||||||||||                                              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396506‑1396604 ....................................................................................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCG  >  NC_014034/1397632‑1397676 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG