New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396679	204 (1.200)	29 (0.170)	10/150	23.3	0.13	coding (561/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396902 =	178 (0.790)					coding (784/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ATTTCGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCG......................................................................  >  NC_014034/1396632‑1396679 .........................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC  >  NC_014034/1396902‑1396946                                                 |||||||||||||||||||||||||                                              ctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:549093/8‑101 (MQ=0) ctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:4065638/8‑101 (MQ=0)  tcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  1:1884232/7‑101 (MQ=0)  tcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  1:2408261/7‑101 (MQ=0)  ccgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:828281/95‑1 (MQ=0)   cgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGA                 >  2:3075314/6‑101 (MQ=0)    gcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:3244003/97‑1 (MQ=0)    gcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:3574842/5‑101 (MQ=0)     ccGGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCGGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:3042668/99‑1 (MQ=0)     cacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:1786142/4‑101 (MQ=0)       cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAat             >  2:70497/2‑99 (MQ=0)        GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg            <  2:1013000/101‑3 (MQ=1)        GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            >  2:1347244/1‑99 (MQ=1)        GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCCCGGGGGCGTGGATCGCAACtg            >  2:1610703/1‑99 (MQ=0)         gCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGC           <  2:1132644/100‑1 (MQ=0)         gCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGC           <  2:1362712/100‑1 (MQ=0)         TCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGC           <  1:3603015/101‑1 (MQ=0)          CGCTCCCCCCGCGGTGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCg          <  1:3843414/101‑2 (MQ=0)           GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt         >  1:4033531/1‑99 (MQ=0)           GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt         <  1:2585977/101‑3 (MQ=0)           GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt         >  1:2376134/1‑99 (MQ=0)            CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTG        <  1:3486444/101‑1 (MQ=0)             TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGC       >  2:2167541/1‑101 (MQ=2)             TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGC       >  1:3488125/1‑101 (MQ=2)              CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCG      >  1:2471703/1‑101 (MQ=9)              CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAccaatgc      <  2:1615327/101‑8 (MQ=2)               CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGC     >  2:3099463/1‑101 (MQ=255)               CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGC     >  2:840736/1‑101 (MQ=255)                  CCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGcc  >  1:2948662/1‑99 (MQ=255)                                                 |||||||||||||||||||||||||                                              ATTTCGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCG......................................................................  >  NC_014034/1396632‑1396679 .........................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC  >  NC_014034/1396902‑1396946 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG