New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396706 =	159 (1.100)	39 (0.270)	5/128	24.8	0.18	coding (588/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397000	188 (0.830)					coding (882/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396747‑1396706 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGA  <  NC_014034/1397000‑1396957                                           ||||||||||||||||||||||||||||||||||||                                             gcgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGG                       <  1:2189134/95‑1 (MQ=0)  cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG                      <  2:2105385/96‑1 (MQ=0)  cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG                      <  1:3062792/96‑1 (MQ=0)    ggcgagcGTTTCGAGCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:1330479/94‑1 (MQ=0)    cgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:286194/98‑1 (MQ=0)     gcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGg                   >  2:4071344/3‑100 (MQ=0)      cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG                  >  2:553227/2‑101 (MQ=1)      cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG                  >  2:4322048/2‑101 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:1826570/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:475743/1‑101 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:861533/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  2:4428057/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:756548/101‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  2:4045584/99‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  2:826650/99‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:132077/99‑1 (MQ=1)           tTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg             <  2:4161960/100‑2 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg             >  2:4150765/1‑100 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc            >  1:4089070/1‑99 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcc           >  2:3065397/1‑98 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc         >  2:931484/1‑96 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc         >  2:3261086/1‑96 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc         >  2:2240384/1‑96 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc         >  2:2035313/1‑96 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc         <  1:1450437/101‑6 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA        >  1:1421014/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA        >  1:4145275/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA        <  2:2926361/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAG       >  2:3984439/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAG       <  2:100055/101‑1 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGat     <  2:3971480/101‑3 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGat     >  2:123916/1‑99 (MQ=1)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc    >  1:761481/1‑98 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc    >  1:4340063/1‑98 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc    <  2:3651386/101‑4 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc    >  1:3377011/1‑98 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcc   >  2:1373187/1‑97 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcc   <  1:2585415/101‑5 (MQ=0)                      CGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcca  <  2:3617324/101‑6 (MQ=0)                                           ||||||||||||||||||||||||||||||||||||                                             GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396747‑1396706 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGA  <  NC_014034/1397000‑1396957 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG