New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396706 =	159 (1.080)	43 (0.290)	11/130	20.0	0.23	coding (588/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397199	136 (0.600)					coding (1081/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..................................................................................  <  NC_014034/1396747‑1396706 .............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAA  <  NC_014034/1397199‑1397153                                           |||||||||||||||||||||||||||||||||||                                                gcgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGG                         <  1:2189134/95‑1 (MQ=0)  cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG                        <  1:3062792/96‑1 (MQ=0)  cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG                        <  2:2105385/96‑1 (MQ=0)    ggcgagcGTTTCGAGCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      <  1:1330479/94‑1 (MQ=0)    cgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      <  1:286194/98‑1 (MQ=0)     gcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGg                     >  2:4071344/3‑100 (MQ=0)      cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  2:553227/2‑101 (MQ=1)      cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  2:4322048/2‑101 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   >  2:475743/1‑101 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:1826570/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  2:4428057/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:756548/101‑1 (MQ=1)       CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:861533/101‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                 <  2:826650/99‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                 <  2:4045584/99‑1 (MQ=1)         gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                 <  1:132077/99‑1 (MQ=1)           tTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG               <  2:4161960/100‑1 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG               >  2:4150765/1‑101 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc              >  1:4089070/1‑100 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc             >  2:3065397/1‑99 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC           >  2:2035313/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC           <  1:1450437/101‑1 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC           >  2:2240384/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC           >  2:3261086/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC           >  2:931484/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA          >  1:1421014/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA          <  2:2926361/101‑1 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA          >  1:4145275/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAg         <  2:100055/101‑2 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAg         >  2:3984439/1‑100 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgat       >  2:123916/1‑98 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgat       <  2:3971480/101‑4 (MQ=1)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatc      >  1:3377011/1‑97 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatc      <  2:3651386/101‑5 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatc      >  1:4340063/1‑97 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatc      >  1:761481/1‑97 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatcc     <  1:2585415/101‑6 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatcc     >  2:1373187/1‑96 (MQ=0)                      CGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatcca    <  2:3617324/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatccag   <  2:945106/101‑8 (MQ=0)                       GCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatccag   >  2:666044/1‑94 (MQ=0)                       GCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatccag   <  1:833417/101‑8 (MQ=0)                        CCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAgatccagc  <  2:644999/101‑9 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                                GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..................................................................................  <  NC_014034/1396747‑1396706 .............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAA  <  NC_014034/1397199‑1397153 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG