New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | 1396706 = | 159 (1.080) | 39 (0.270) | 5/130 | 25.0 | 0.18 | coding (588/1578 nt) | RCAP_rcc01307 | hypothetical protein |
? | NC_014034 | = 1434382 | 190 (0.840) | intergenic (‑161/‑797) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................ < NC_014034/1396747‑1396706
.............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCCAGCAGGATCA < NC_014034/1434382‑1434338
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gcgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGG < 1:2189134/95‑1 (MQ=0)
cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG < 2:2105385/96‑1 (MQ=0)
cgcgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGG < 1:3062792/96‑1 (MQ=0)
ggcgagcGTTTCGAGCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG < 1:1330479/94‑1 (MQ=0)
cgcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG < 1:286194/98‑1 (MQ=0)
gcCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGg > 2:4071344/3‑100 (MQ=0)
cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG > 2:553227/2‑101 (MQ=1)
cCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG > 2:4322048/2‑101 (MQ=1)
CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:1826570/101‑1 (MQ=1)
CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:475743/1‑101 (MQ=1)
CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:861533/101‑1 (MQ=1)
CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC < 2:4428057/101‑1 (MQ=1)
CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:756548/101‑1 (MQ=1)
gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 2:4045584/99‑1 (MQ=1)
gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 2:826650/99‑1 (MQ=1)
gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 1:132077/99‑1 (MQ=1)
tTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg < 2:4161960/100‑2 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 2:4150765/1‑100 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc > 1:4089070/1‑99 (MQ=1)
TTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcc > 2:3065397/1‑98 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc > 2:931484/1‑96 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc > 2:3261086/1‑96 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc > 2:2240384/1‑96 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc > 2:2035313/1‑96 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccgc < 1:1450437/101‑6 (MQ=1)
GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA > 1:1421014/1‑101 (MQ=1)
GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA > 1:4145275/1‑101 (MQ=1)
GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCA < 2:2926361/101‑1 (MQ=1)
ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAG > 2:3984439/1‑101 (MQ=1)
ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAG < 2:100055/101‑1 (MQ=1)
CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGat < 2:3971480/101‑3 (MQ=1)
CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGat > 2:123916/1‑99 (MQ=1)
CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc > 1:761481/1‑98 (MQ=0)
CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc > 1:4340063/1‑98 (MQ=0)
CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc < 2:3651386/101‑4 (MQ=0)
CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatc > 1:3377011/1‑98 (MQ=0)
ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcc > 2:1373187/1‑97 (MQ=0)
ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcc < 1:2585415/101‑5 (MQ=0)
CGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGatcca < 2:3617324/101‑6 (MQ=0)
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GAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................ < NC_014034/1396747‑1396706
.............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCCAGCAGGATCA < NC_014034/1434382‑1434338
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 38 ≤
ATCG
|