New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396867	161 (1.060)	52 (0.340)	5/134	25.6	0.26	coding (749/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397632 =	137 (0.610)					coding (1514/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396825‑1396867 ............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCG  >  NC_014034/1397632‑1397676                                            |||||||||||||||||||||||||||||||||                                              cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                      >  2:749586/11‑101 (MQ=0) cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:3407671/11‑101 (MQ=0) cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:3690638/91‑1 (MQ=0) catgggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                      >  2:3772340/11‑101 (MQ=0)  attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:2879910/10‑101 (MQ=0)  attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:4186206/92‑1 (MQ=0)  attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:4402835/10‑101 (MQ=0)  attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  2:2386524/10‑101 (MQ=0)   ttggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  2:3119270/93‑1 (MQ=0)    tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:1302922/8‑101 (MQ=0)    tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  1:2274427/8‑101 (MQ=0)    tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  1:2324378/8‑101 (MQ=0)    tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:3989742/8‑101 (MQ=0)     ggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2299695/95‑1 (MQ=1)     ggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2994627/95‑1 (MQ=1)      gccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:4119223/6‑101 (MQ=1)      gccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  2:3813060/6‑101 (MQ=1)      gccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:3118427/96‑1 (MQ=1)        cccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:3522513/4‑101 (MQ=1)         ccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  2:4063411/99‑1 (MQ=1)         ccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:1634982/99‑1 (MQ=1)          cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGGCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:3763901/100‑1 (MQ=1)          cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             >  1:298260/2‑101 (MQ=1)          cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             >  1:1689437/2‑101 (MQ=1)          cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:4081188/100‑1 (MQ=1)          cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGAGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:835095/100‑1 (MQ=1)          cGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:1177674/100‑1 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGCAACTA            >  2:3437707/1‑101 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA            >  1:278200/1‑101 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA            >  1:2414887/1‑101 (MQ=1)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA          <  1:3233515/101‑1 (MQ=1)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA          <  2:3379842/101‑1 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  2:717219/1‑99 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        <  1:1925187/101‑3 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  2:1983309/1‑99 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        >  1:168507/1‑99 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc        <  1:1729196/101‑3 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGAGCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGGCGCTCCCCCCGCGGGGGCGTGGATCGGAACTACAac        >  2:4167770/1‑99 (MQ=0)                CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGTTCGAAACTACcccg       >  1:4213785/1‑97 (MQ=0)                CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg       <  1:1292481/101‑4 (MQ=1)                CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg       >  1:19824/1‑98 (MQ=1)                CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCGCCCCCCGCGGGGGCGTGGATCGAACCTAtaccg       >  2:2059702/1‑96 (MQ=0)                 TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg      >  2:2604205/1‑97 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg      >  1:895726/1‑97 (MQ=1)                   CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg    >  1:2316220/1‑95 (MQ=0)                   CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg    >  1:195512/1‑95 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  2:3024014/101‑8 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  1:936754/101‑8 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc   <  1:2117313/101‑8 (MQ=0)                     CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  2:2555617/101‑9 (MQ=0)                     CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  2:3762607/101‑9 (MQ=0)                     CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct  <  1:2433721/101‑9 (MQ=0)                                            |||||||||||||||||||||||||||||||||                                              GGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396825‑1396867 ............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCG  >  NC_014034/1397632‑1397676 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG