New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396968 =163 (1.110)59 (0.400) 19/130 15.1 0.28 coding (850/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397131 142 (0.630)coding (1013/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC...............................................................................................................................  <  NC_014034/1397017‑1396968
.....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCGCGCCCCATCACTCAAGACGGCAGTTTCGATCCACGCCCCCGCGGGGGG  <  NC_014034/1397131‑1397040
                                                  |||||||||||||||||||||||||||||||||||                                                                                            
gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                                                                              <  2:364992/91‑1 (MQ=0)
gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                                                                              >  2:1784018/11‑101 (MQ=0)
  tgcggtcagGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            <  2:3850219/92‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCTCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            <  1:3982663/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            <  1:547710/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            <  1:3120593/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            >  2:3183226/9‑101 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                            >  2:1236207/9‑101 (MQ=0)
   gcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCG                                                                           <  2:2978056/94‑1 (MQ=0)
   gcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGACCCACGCCCCCG                                                                           >  2:1293541/8‑101 (MQ=0)
     ggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCG                                                                         >  2:3158712/6‑101 (MQ=1)
     ggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGGTTCGCTCCACGCCCCCGCG                                                                         >  1:1939619/6‑101 (MQ=0)
      gtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGG                                                                        <  2:1151090/97‑1 (MQ=1)
       tcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                       <  2:2864131/98‑1 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                     >  1:3221170/2‑101 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                     <  2:1816402/100‑1 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                     <  2:272432/100‑1 (MQ=1)
          AGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                                                                    >  1:2797709/1‑101 (MQ=1)
          AGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                                                                    <  2:359510/101‑1 (MQ=1)
           GCTGATTTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                   <  2:1310785/101‑1 (MQ=1)
           GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                   <  1:3568041/101‑1 (MQ=1)
           GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGATTCGATCCACGCCCCCGCGGGGGGg                                                                   >  1:3592749/1‑100 (MQ=1)
            CTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                  <  2:523480/101‑1 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                 >  1:4028589/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                 >  2:297723/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                 >  2:4013093/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                 <  1:1178523/101‑1 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                 <  2:1344831/101‑1 (MQ=1)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGCTCCACNCCCCCGCGGGNGGgnnn                                                                >  2:1829794/1‑97 (MQ=0)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                >  1:561494/1‑101 (MQ=1)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                <  2:3226649/101‑1 (MQ=1)
               ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGA                                                               >  2:3141720/1‑101 (MQ=1)
               ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                               <  1:1050776/101‑1 (MQ=1)
                TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                              <  1:2845997/101‑1 (MQ=1)
                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                             <  2:528679/101‑1 (MQ=1)
                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                             >  1:1490834/1‑101 (MQ=1)
                 GTTTCGACCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGCCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                             <  1:154387/101‑1 (MQ=0)
                   TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt                                                           >  2:179521/1‑100 (MQ=1)
                   TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt                                                           >  2:4081690/1‑100 (MQ=1)
                    TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtc                                                          <  1:1667870/101‑3 (MQ=1)
                     CGATCCACGCCCCGGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGCGGAGCGACGAtcg                                                         <  1:2985795/101‑4 (MQ=0)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcg                                                         >  1:4019023/1‑98 (MQ=1)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcg                                                         >  1:3918276/1‑98 (MQ=1)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCCCGGGGGGGGCGACGAtcg                                                         >  1:3117374/1‑98 (MQ=0)
                       ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgag                                                       <  2:1682245/101‑6 (MQ=1)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagc                                                      <  2:56384/101‑7 (MQ=0)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagc                                                      >  1:1938211/1‑95 (MQ=0)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagc                                                      <  2:2621549/101‑7 (MQ=0)
                         cccCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagcc                                                     <  1:2369543/98‑8 (MQ=0)
                          CACGCCCCCGCGGGGGGNGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    <  2:1749389/101‑9 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    >  1:2550843/1‑93 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    >  2:3687143/1‑93 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    <  2:3743997/101‑9 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    >  1:916614/1‑93 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagccc                                                    <  2:1007626/101‑9 (MQ=0)
                           cCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagcccg                                                   <  1:988666/100‑10 (MQ=0)
                           ACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagcccg                                                   >  2:2620542/1‑92 (MQ=0)
                            CGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagcccgg                                                  >  1:3916107/1‑91 (MQ=0)
                            CGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtcgagcccgg                                                  >  2:494992/1‑91 (MQ=0)
                                                                            gaggtgggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCATGTGCTCGCGCCCCATCACTCAAGACGGCAGTTTCGATCCACGCCCCCGCGGGGGG  <  2:3737447/93‑1 (MQ=0)
                                                  |||||||||||||||||||||||||||||||||||                                                                                            
ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC...............................................................................................................................  <  NC_014034/1397017‑1396968
.....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCGCGCCCCATCACTCAAGACGGCAGTTTCGATCCACGCCCCCGCGGGGGG  <  NC_014034/1397131‑1397040

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG