New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396968 =163 (1.110)54 (0.370) 15/130 17.4 0.26 coding (850/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397664 146 (0.650)coding (1546/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.............................................................................  <  NC_014034/1397017‑1396968
.....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGATGGGCGG  <  NC_014034/1397664‑1397623
                                                  |||||||||||||||||||||||||||||||||||                                          
gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                            >  2:1784018/11‑101 (MQ=0)
gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                            <  2:364992/91‑1 (MQ=0)
  tgcggtcagGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          <  2:3850219/92‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCTCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          <  1:3982663/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          >  2:1236207/9‑101 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          <  1:547710/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          <  1:3120593/93‑1 (MQ=0)
  tgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                          >  2:3183226/9‑101 (MQ=0)
   gcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCG                         <  2:2978056/94‑1 (MQ=0)
   gcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGACCCACGCCCCCG                         >  2:1293541/8‑101 (MQ=0)
     ggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCG                       >  2:3158712/6‑101 (MQ=1)
     ggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGGTTCGCTCCACGCCCCCGCG                       >  1:1939619/6‑101 (MQ=0)
      gtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGG                      <  2:1151090/97‑1 (MQ=1)
       tcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                     <  2:2864131/98‑1 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                   <  2:1816402/100‑1 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                   >  1:3221170/2‑101 (MQ=1)
         aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                   <  2:272432/100‑1 (MQ=1)
          AGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                  >  1:2797709/1‑101 (MQ=1)
          AGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:359510/101‑1 (MQ=1)
           GCTGATTTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                 <  2:1310785/101‑1 (MQ=1)
           GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:3568041/101‑1 (MQ=1)
           GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGATTCGATCCACGCCCCCGCGGGGGGg                 >  1:3592749/1‑100 (MQ=1)
            CTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:523480/101‑1 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  2:4013093/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:1178523/101‑1 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:4028589/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  2:297723/1‑101 (MQ=1)
             TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:1344831/101‑1 (MQ=1)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGCTCCACNCCCCCGCGGGNGGgnnn              >  2:1829794/1‑97 (MQ=0)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG              >  1:561494/1‑101 (MQ=1)
              GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  2:3226649/101‑1 (MQ=1)
               ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGA             >  2:3141720/1‑101 (MQ=1)
               ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             <  1:1050776/101‑1 (MQ=1)
                TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            <  1:2845997/101‑1 (MQ=1)
                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg           <  2:528679/101‑2 (MQ=1)
                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg           >  1:1490834/1‑100 (MQ=1)
                 GTTTCGACCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGCCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg           <  1:154387/101‑2 (MQ=0)
                   TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgat         >  2:179521/1‑98 (MQ=1)
                   TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgat         >  2:4081690/1‑98 (MQ=1)
                    TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatc        <  1:1667870/101‑5 (MQ=1)
                     CGATCCACGCCCCGGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGCGGAGCGACgatcg       <  1:2985795/101‑6 (MQ=0)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcg       >  1:4019023/1‑96 (MQ=1)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcg       >  1:3918276/1‑96 (MQ=1)
                     CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCCCGGGGGGGGCGACgatcg       >  1:3117374/1‑96 (MQ=0)
                       ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgag     <  2:1682245/101‑8 (MQ=1)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagc    <  2:56384/101‑9 (MQ=0)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagc    >  1:1938211/1‑93 (MQ=0)
                        TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagc    <  2:2621549/101‑9 (MQ=0)
                          CACGCCCCCGCGGGGGGNGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  <  2:1749389/101‑11 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  >  2:3687143/1‑91 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  <  2:3743997/101‑11 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  >  1:2550843/1‑91 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  >  1:916614/1‑91 (MQ=0)
                          CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcgagccc  <  2:1007626/101‑11 (MQ=0)
                                                  |||||||||||||||||||||||||||||||||||                                          
ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.............................................................................  <  NC_014034/1397017‑1396968
.....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGATGGGCGG  <  NC_014034/1397664‑1397623

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG