New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 1397000 | 188 (1.300) | 60 (0.410) | 14/128 | 17.8 | 0.26 | coding (882/1578 nt) | RCAP_rcc01307 | hypothetical protein |
? | NC_014034 | 1434415 = | 152 (0.670) | intergenic (‑194/‑764) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
GCTTCCGCCTGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC....................................................................................................................................... > NC_014034/1396954‑1397000
...................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC > NC_014034/1434415‑1434513
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atctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGG > 2:3413524/9‑101 (MQ=0)
tctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGG > 2:2486996/8‑101 (MQ=0)
ctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC < 2:2565099/95‑1 (MQ=0)
ctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC > 1:2818788/7‑101 (MQ=0)
ctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC > 1:487021/7‑101 (MQ=0)
ctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC > 1:2507107/7‑101 (MQ=0)
ctttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC < 1:1274619/95‑1 (MQ=0)
ttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGT > 2:3583998/5‑101 (MQ=0)
ttgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGT < 2:2603677/97‑1 (MQ=0)
tgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG < 2:3121347/98‑1 (MQ=0)
tgtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG > 1:1586227/4‑101 (MQ=0)
gtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG < 2:4401344/99‑1 (MQ=1)
gtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG < 2:3899311/99‑1 (MQ=1)
gtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG < 1:599804/99‑1 (MQ=1)
gtCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG < 1:616963/99‑1 (MQ=1)
tCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGA < 2:1962375/100‑1 (MQ=1)
tCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGA > 2:1318794/2‑101 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:1048408/101‑1 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT > 2:2262128/1‑101 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT > 2:2291377/1‑101 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:2782328/101‑1 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT > 2:3510725/1‑101 (MQ=1)
CTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT > 1:1206894/1‑101 (MQ=1)
TGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC < 2:2228383/101‑1 (MQ=1)
TGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC > 2:1490729/1‑101 (MQ=1)
TGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCCTGGATC > 1:727353/1‑101 (MQ=0)
GCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG < 2:2559064/101‑1 (MQ=1)
GCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG > 1:3978592/1‑101 (MQ=1)
GCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG < 1:447186/101‑1 (MQ=1)
GCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG < 2:1045072/101‑1 (MQ=1)
GCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG < 1:1231635/101‑1 (MQ=1)
GCGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG < 1:3512558/101‑1 (MQ=0)
gcGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA > 1:2621254/3‑101 (MQ=1)
gcGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA > 2:543366/3‑101 (MQ=1)
cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA > 2:979091/2‑101 (MQ=1)
GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC > 2:2797503/1‑101 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 2:1389882/101‑2 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt > 1:1662818/1‑100 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt > 2:3186089/1‑100 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 2:2601028/101‑2 (MQ=1)
GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 1:4195105/101‑2 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtt > 2:484484/1‑99 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtt < 1:4045844/101‑3 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtt > 1:332353/1‑99 (MQ=1)
CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttg < 1:1418259/101‑4 (MQ=1)
cCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttga < 1:48787/100‑5 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttga > 1:4282289/1‑97 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgat < 1:2511230/101‑6 (MQ=1)
TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCCGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatg > 1:2160933/1‑95 (MQ=0)
TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatg > 1:2389038/1‑95 (MQ=0)
TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatg > 1:2976215/1‑95 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgac > 1:4081950/1‑93 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgac < 2:3869892/101‑9 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgac > 1:698258/1‑93 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgac < 2:116273/101‑9 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGCATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctgatgac > 2:1939490/1‑93 (MQ=0)
CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgacc < 1:3584246/101‑10 (MQ=0)
CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgacc < 1:1841803/101‑10 (MQ=0)
CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgacc < 1:1648890/101‑10 (MQ=0)
CCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACttgatgacca < 1:4196191/101‑11 (MQ=0)
TGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC < 1:1876484/101‑1 (MQ=31)
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GCTTCCGCCTGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC....................................................................................................................................... > NC_014034/1396954‑1397000
...................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC > NC_014034/1434415‑1434513
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 21 ≤
ATCG
< 29 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|