BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397131	139 (0.960)	49 (0.340)	9/128	21.3	0.25	coding (1013/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	1397567 =	154 (0.680)	49 (0.340)	9/128	21.3	0.25	coding (1449/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


CCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..................................................................................  >  NC_014034/1397040‑1397131


................................................................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGC  >  NC_014034/1397567‑1397612


                                                                                            ||||||||||||||||||||||||||||||||||||


CCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCcccacctc                                                                           >  2:3737447/1‑93 (MQ=0)


                                                ccgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCG                           <  2:494992/91‑1 (MQ=0)


                                                ccgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCG                           <  1:3916107/91‑1 (MQ=0)


                                                 cgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGg                          >  1:988666/10‑100 (MQ=0)


                                                 cgggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGT                          <  2:2620542/92‑1 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         >  2:1007626/9‑101 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  1:916614/93‑1 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  1:2550843/93‑1 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  2:3687143/93‑1 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         >  2:3743997/9‑101 (MQ=0)


                                                  gggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCNCCCCCCGCGGGGGCGTG                         >  2:1749389/9‑101 (MQ=0)


                                                   ggctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGGGG                        >  1:2369543/8‑101 (MQ=0)


                                                    gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:2621549/7‑101 (MQ=0)


                                                    gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  1:1938211/95‑1 (MQ=0)


                                                    gctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:56384/7‑101 (MQ=0)


                                                     ctcgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  2:1682245/6‑101 (MQ=1)


                                                       cgaTCGTCGCTCCGCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCCGGGGCGTGGATCG                    >  1:2985795/4‑101 (MQ=0)


                                                       cgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:3918276/98‑1 (MQ=1)


                                                       cgaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:4019023/98‑1 (MQ=1)


                                                       cgaTCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:3117374/98‑1 (MQ=0)


                                                        gaTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  1:1667870/3‑101 (MQ=1)


                                                         aTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:4081690/100‑1 (MQ=1)


                                                         aTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:179521/100‑1 (MQ=1)


                                                           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGGCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAC                >  1:154387/1‑101 (MQ=0)


                                                           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  1:1490834/101‑1 (MQ=1)


                                                           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  2:528679/1‑101 (MQ=1)


                                                            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA               >  1:2845997/1‑101 (MQ=1)


                                                             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT              >  1:1050776/1‑101 (MQ=1)


                                                             TCGCCCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT              <  2:3141720/101‑1 (MQ=1)


                                                              nnncCCNCCCGCGGGGGNGTGGAGCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             <  2:1829794/97‑1 (MQ=0)


                                                              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             <  1:561494/101‑1 (MQ=1)


                                                              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             >  2:3226649/1‑101 (MQ=1)


                                                               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            >  1:1178523/1‑100 (MQ=1)


                                                               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  2:4013093/101‑2 (MQ=1)


                                                               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  1:4028589/101‑2 (MQ=1)


                                                               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  2:297723/101‑2 (MQ=1)


                                                               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            >  2:1344831/1‑100 (MQ=1)


                                                                CTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCag           >  2:523480/1‑99 (MQ=1)


                                                                 cCCCCCCGCGGGGGCGTGGATCGAATCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC          <  1:3592749/100‑1 (MQ=1)


                                                                 TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC          >  1:3568041/1‑101 (MQ=1)


                                                                 TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCAGC          >  2:1310785/1‑101 (MQ=1)


                                                                  CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCt         >  2:359510/1‑100 (MQ=1)


                                                                  CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCt         <  1:2797709/101‑2 (MQ=1)


                                                                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        >  2:272432/1‑99 (MQ=1)


                                                                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        >  2:1816402/1‑99 (MQ=1)


                                                                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        <  1:3221170/101‑3 (MQ=1)


                                                                     CCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttga      >  2:2864131/1‑97 (MQ=1)


                                                                      CCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgac     >  2:1151090/1‑96 (MQ=1)


                                                                       CGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgacc    <  2:3158712/101‑7 (MQ=1)


                                                                         CGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgaccgc  >  2:2978056/1‑93 (MQ=0)


                                                                                            ||||||||||||||||||||||||||||||||||||


CCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..................................................................................  >  NC_014034/1397040‑1397131


................................................................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGC  >  NC_014034/1397567‑1397612

Base quality scores:


ATCG

< 3 ≤


ATCG

< 16 ≤


ATCG

< 24 ≤


ATCG

< 32 ≤


ATCG

< 39 ≤


ATCG