New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397265	130 (0.900)	46 (0.320)	7/128	22.9	0.24	coding (1147/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397567 =	154 (0.680)					coding (1449/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

AGATCCGCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..................................................................................  >  NC_014034/1397223‑1397265 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGC  >  NC_014034/1397567‑1397612                                            ||||||||||||||||||||||||||||||||||||                                               cgggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGT                          <  2:2620542/91‑1 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         >  2:1007626/10‑101 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  1:916614/92‑1 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  1:2550843/92‑1 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         <  2:3687143/92‑1 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTG                         >  2:3743997/10‑101 (MQ=0)  gggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCNCCCCCCGCGGGGGCGTG                         >  2:1749389/10‑101 (MQ=0)   ggctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGGGG                        >  1:2369543/9‑101 (MQ=0)    gctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:56384/8‑101 (MQ=0)    gctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  1:1938211/94‑1 (MQ=0)    gctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:2621549/8‑101 (MQ=0)     ctcgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  2:1682245/7‑101 (MQ=1)       cgatCGTCGCTCCGCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCCGGGGCGTGGATCG                    >  1:2985795/5‑101 (MQ=0)       cgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:3918276/97‑1 (MQ=1)       cgatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:4019023/97‑1 (MQ=1)       cgatCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:3117374/97‑1 (MQ=0)        gatCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  1:1667870/4‑101 (MQ=1)         atCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:4081690/99‑1 (MQ=1)         atCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:179521/99‑1 (MQ=1)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGGCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAC                >  1:154387/1‑101 (MQ=0)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  1:1490834/101‑1 (MQ=1)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  2:528679/1‑101 (MQ=1)            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA               >  1:2845997/1‑101 (MQ=1)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT              >  1:1050776/1‑101 (MQ=1)             TCGCCCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT              <  2:3141720/101‑1 (MQ=1)              nnncCCNCCCGCGGGGGNGTGGAGCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             <  2:1829794/97‑1 (MQ=0)              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             <  1:561494/101‑1 (MQ=1)              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC             >  2:3226649/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            >  1:1178523/1‑100 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  2:4013093/101‑2 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  2:297723/101‑2 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            <  1:4028589/101‑2 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa            >  2:1344831/1‑100 (MQ=1)                CTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCag           >  2:523480/1‑99 (MQ=1)                 cCCCCCCGCGGGGGCGTGGATCGAATCCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC          <  1:3592749/100‑1 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGC          >  1:3568041/1‑101 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCAGC          >  2:1310785/1‑101 (MQ=1)                  CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCt         >  2:359510/1‑100 (MQ=1)                  CCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCt         <  1:2797709/101‑2 (MQ=1)                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        >  2:272432/1‑99 (MQ=1)                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        >  2:1816402/1‑99 (MQ=1)                   CCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtt        <  1:3221170/101‑3 (MQ=1)                     CCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttga      >  2:2864131/1‑97 (MQ=1)                      CCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgac     >  2:1151090/1‑96 (MQ=1)                       CGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgacc    <  2:3158712/101‑7 (MQ=1)                         CGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCttgaccgc  >  2:2978056/1‑93 (MQ=0)                                            ||||||||||||||||||||||||||||||||||||                                               AGATCCGCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..................................................................................  >  NC_014034/1397223‑1397265 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGC  >  NC_014034/1397567‑1397612 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG