New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397400	158 (1.040)	25 (0.170)	7/134	23.7	0.14	coding (1282/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397836 =	143 (0.630)					intergenic (+140/+1758)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

GACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1397365‑1397400 .....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACCTCAG  >  NC_014034/1397836‑1397879                                     |||||||||||||||||||||||||||||||||                                             cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:4283484/4‑101 (MQ=1) cagGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGACGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  1:320932/4‑101 (MQ=1)  agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:558154/99‑2 (MQ=1)  agGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt             <  2:3749483/99‑2 (MQ=1)   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            <  1:1900234/100‑3 (MQ=1)   gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtc            >  1:2086180/2‑99 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           >  1:2383835/1‑101 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:1582320/101‑1 (MQ=1)    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG           <  2:2968462/101‑1 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:3264107/1‑101 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  2:3194924/101‑1 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          >  2:2416091/1‑101 (MQ=1)     TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGG          <  1:1906508/101‑1 (MQ=0)       cCTCCCCCCGCGGGGGCTTGGATCGAAACTTGTCTGACGCCCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCA        <  1:3989326/100‑1 (MQ=0)       GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCA        >  1:25827/1‑101 (MQ=0)       GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCA        <  1:3371662/101‑1 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGGAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAa       >  2:143840/1‑100 (MQ=0)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAa       >  2:2610744/1‑100 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAa       <  2:1595297/101‑2 (MQ=1)        CTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAa       >  1:1713885/1‑100 (MQ=1)         TCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAag      >  1:4448669/1‑99 (MQ=1)          CCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAagg     >  2:2021137/1‑98 (MQ=1)           CCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAATCGGCAagga    >  2:142936/1‑97 (MQ=0)            CCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAaggac   <  1:887402/101‑6 (MQ=1)             CCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAaggaca  >  2:3600663/1‑95 (MQ=1)                                     |||||||||||||||||||||||||||||||||                                             GACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.............................................................................  >  NC_014034/1397365‑1397400 .....................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACCTCAG  >  NC_014034/1397836‑1397879 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG