New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397401	158 (1.060)	48 (0.320)	2/132	28.7	0.22	coding (1283/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397567 =	180 (0.800)					coding (1449/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCAGACGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTC...............................................................................  >  NC_014034/1397358‑1397401 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGG  >  NC_014034/1397567‑1397611                                             ||||||||||||||||||||||||||||||||||                                              tcaagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                        <  2:1696781/91‑1 (MQ=1) tcaagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                        >  1:2844909/11‑101 (MQ=1)  caagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGG                       <  2:856392/92‑1 (MQ=1)   aagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGA                      <  1:2062223/93‑1 (MQ=1)    agattgaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:25814/94‑1 (MQ=1)    agattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                     >  1:521557/8‑101 (MQ=1)    agattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:488347/94‑1 (MQ=1)     gattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:4283753/95‑1 (MQ=1)      attcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                   >  2:173601/6‑101 (MQ=1)      attcaGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                   >  1:2010328/6‑101 (MQ=1)       ttcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  >  1:2736164/5‑101 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  1:224193/98‑1 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  2:2010199/98‑1 (MQ=1)          aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               >  1:579377/2‑101 (MQ=1)          aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               >  1:1783973/2‑101 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA              <  2:3055567/101‑1 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA              >  1:1665150/1‑101 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA              <  1:3843245/101‑1 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc             <  2:1783854/101‑2 (MQ=11)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACAcc            >  2:2742486/1‑99 (MQ=14)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc            >  2:1160083/1‑99 (MQ=31)              gccCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           <  1:2289510/98‑1 (MQ=14)              GCTCGCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           >  2:3764467/1‑101 (MQ=14)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTNGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           <  1:2007056/101‑1 (MQ=14)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           >  2:1468537/1‑101 (MQ=14)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           <  2:320897/101‑1 (MQ=14)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           <  1:1122108/101‑1 (MQ=14)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC           <  1:143861/101‑1 (MQ=14)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          <  2:642519/101‑1 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          <  1:1241203/101‑1 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          <  2:1755247/101‑1 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          >  1:3061356/1‑101 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          <  1:2566513/101‑1 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCG          >  1:1755366/1‑101 (MQ=11)                gCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGg         <  1:3900300/100‑2 (MQ=11)                gCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGg         <  1:2852383/100‑2 (MQ=11)                TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGg         >  2:916052/1‑100 (MQ=11)                TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGg         >  2:3439305/1‑100 (MQ=11)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATAGAAACACCCGgc        <  1:802326/101‑3 (MQ=2)                  CCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcg       >  1:608148/1‑98 (MQ=11)                   CCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgc      >  1:3143641/1‑97 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGTGCGTGGATCGAAACACCCGgcgcc     <  1:4415426/101‑6 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgcc     <  2:3716852/101‑6 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgcc     <  2:2623561/101‑6 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgcc     <  2:396788/101‑6 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgccg    >  2:2875739/1‑95 (MQ=0)                       GCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgccgca  <  1:2021274/101‑9 (MQ=0)                       GCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGgcgccgca  >  1:240461/1‑93 (MQ=0)                                             ||||||||||||||||||||||||||||||||||                                              CCAGACGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTC...............................................................................  >  NC_014034/1397358‑1397401 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGG  >  NC_014034/1397567‑1397611 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG