New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1406338212 (1.010)2 (0.010) 2/186 34.9 0.01 coding (849/1119 nt) RCAP_rcc01315 hypothetical protein
?NC_014034 = 2292178 213 (0.940)coding (661/1623 nt) phaD monovalent cation/proton antiporter subunit D
Rejected: Position hash score below cutoff.

TGACGTACGTCCTCCCCATCCTCGTTGCCTGCCTGGCATCACCGCCTGACAGCTGGCTCCTGATCGAGAACCCCGAAGCGCATCTCCATCCACAAGGCCAGGCGGCG....................................................................................................  >  NC_014034/1406232‑1406338
....................................................................................................GGCGGCGCTGATGGGGCTCGCCTTTCTAATCAAGGCCGGGATCTGGCCTTTGTCCTTCTGGCTGCCCACCGCCTATATGGCCAGCGCCGCGCCGGTGGCGGCGATCT  <  NC_014034/2292178‑2292079
                                                                                                                                                                                                               
                                                            TGATCGAGAACCCCGAAGCGCATCTCCATCCACAAGGCCAGGCGGCGCTGATGGGGCTCGCCTTTCTAATCAAGGCCGGGATCTGGCCTTTGTCCTTCTGG                                                >  2:2284759/1‑101 (MQ=255)
                                                                          GAAGCGCATCTCCATCCACAAGGCCAGGCGGCGCTGATGGGGCTCGCCTTTCTAATCAAGGCCGGGATCTGGCCTTTGTCCTTCTGGCTGCCCACCGCCTA                                  <  1:2284904/101‑1 (MQ=255)
                                                                                                                                                                                                               
TGACGTACGTCCTCCCCATCCTCGTTGCCTGCCTGGCATCACCGCCTGACAGCTGGCTCCTGATCGAGAACCCCGAAGCGCATCTCCATCCACAAGGCCAGGCGGCG....................................................................................................  >  NC_014034/1406232‑1406338
....................................................................................................GGCGGCGCTGATGGGGCTCGCCTTTCTAATCAAGGCCGGGATCTGGCCTTTGTCCTTCTGGCTGCCCACCGCCTATATGGCCAGCGCCGCGCCGGTGGCGGCGATCT  <  NC_014034/2292178‑2292079

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG