New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1416690 =257 (1.140)2 (0.010) 2/200 36.2 0.01 coding (1016/1215 nt) RCAP_rcc01320 hypothetical protein
?NC_014034 1416705 = 239 (1.060)coding (1031/1215 nt) RCAP_rcc01320 hypothetical protein
Rejected: Position hash score below cutoff.

AACGCCAGACTGCCGTAAAGGCAGATGGGGATCTGGTAGTTTCCCTTGAAACGCCGGTCGGGCGAGCCGTCCT.............................  <  NC_014034/1416762‑1416690
.........................................................................ACCGGCGTTTCAAGGGAAACTACCAGATC  >  NC_014034/1416705‑1416733
                                                                                                      
tACGCCAGACTGCCGTAAAGGCAGATGGGGATCTGGTAGTTTCCCTTGAAACGCCGGTCGGGCGAGCCGTCCTACCGGCGTTTCAAGGGAAACTACCAGAT   <  2:2677231/100‑1 (MQ=255)
 ACGCCAGACTGCCGTAAAGGCAGATGGGGATCTGGTAGTTTCCCTTGAAACGCCGGTCGGGCGAGCCGTCCTACCGGCGTTTCAAGGGAAACTACCAGATa  >  1:2677403/1‑100 (MQ=255)
                                                                                                      
AACGCCAGACTGCCGTAAAGGCAGATGGGGATCTGGTAGTTTCCCTTGAAACGCCGGTCGGGCGAGCCGTCCT.............................  <  NC_014034/1416762‑1416690
.........................................................................ACCGGCGTTTCAAGGGAAACTACCAGATC  >  NC_014034/1416705‑1416733

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG