New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1419014203 (0.990)2 (0.010) 2/182 34.5 0.01 coding (1311/1644 nt) RCAP_rcc01323 IS66 family transposase
?NC_014034 1809497 = 204 (0.900)coding (754/855 nt) RCAP_rcc01671 carbohydrate kinase
Rejected: Position hash score below cutoff.

GTTCTTCTTCGTAAGGGCAACGGGACGCATGCCGCGCTCGACCGGGTTGTTGTCGATCGCAATCCGACCGTCAAGAACATAACGGATCATGTCGTCCCACGCAGCCAGG....................................................................................................  >  NC_014034/1418906‑1419014
....................................................................................................GCAGCCAGGTGCCGGTGCAGGCGGCCTCGAACGGTGTCAGCCCGCGCGCCATCAGCCCGGTGATGATCCCCGCCAGAACGTCGCCCGATCCGGCCGTGGCCAGCCAGGG  >  NC_014034/1809497‑1809596
                                                                                                                                                                                                                 
                                                                              ATAACGGATCATGTCGTCCCACGCAGCCAGGTGCCGGTGCAGGCGGCCTCGAACGGTGTCAGCCCGCGCGCCATCAGCCCGGTGATGATCCCCGCCAGAAC                                <  1:3043511/101‑1 (MQ=255)
                                                                              ATAACGGATCATGTCGTCCCACGCAGCCAGGTGCCGGTGCAGGCGGCCTCGAACGGTGTCAGCCCGCGCGCCATCAGCCCGGTGATGATCCCCGCCAGAAC                                >  2:3043290/1‑101 (MQ=255)
                                                                                                                                                                                                                 
GTTCTTCTTCGTAAGGGCAACGGGACGCATGCCGCGCTCGACCGGGTTGTTGTCGATCGCAATCCGACCGTCAAGAACATAACGGATCATGTCGTCCCACGCAGCCAGG....................................................................................................  >  NC_014034/1418906‑1419014
....................................................................................................GCAGCCAGGTGCCGGTGCAGGCGGCCTCGAACGGTGTCAGCCCGCGCGCCATCAGCCCGGTGATGATCCCCGCCAGAACGTCGCCCGATCCGGCCGTGGCCAGCCAGGG  >  NC_014034/1809497‑1809596

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG