New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 144275	175 (0.850)	2 (0.010)	2/182	34.5	0.01	coding (426/1494 nt)	phoA	alkaline phosphatase
	?	NC_014034	3541555 =	216 (0.960)					coding (139/912 nt)	prpB	methylisocitrate lyase
Rejected: Position hash score below cutoff.

GACCCCGGATTCGGCACCGACGGCGGCGGCGATGAATTCGGGGATCAAGACGAAGAACGGCATGATCAACGTGCTGGACACCGTCAATGTCGGCGATTGCGCCGCGGGG....................................................................................................  >  NC_014034/144167‑144275 ....................................................................................................GCCGCGGGGTTTCAGGCGCTTTATCTGTCGGGCGCGGCGATGTCGGCCTCGATGGGCCTGCCGGACCTCGGCATCCTGACGGTGGACGAGGTCGCCTTTTTCATCCGCC  >  NC_014034/3541555‑3541654                                                                                                                                                                                                                                                    GAATTCGGGGATCAAGACGAAGAACGGCATGATCAACGTGCTGGACACCGTCAATGTCGGCGATTGCGCCGCGGGGTTTCAGGCGCTTTATCTGTCCGGCG                                                                             >  1:4215532/1‑101 (MQ=255)                                                                        TGCTGGACACCGTCAATGTCGGCGATTGCGCCGCGGGGTTTCAGGCGCTTTATCTGTCCGGCGCGGCGATGTCGGCCTCGATGGGCCTGCCGGACCTCGGC                                       <  2:4215271/101‑1 (MQ=255)                                                                                                                                                                                                                   GACCCCGGATTCGGCACCGACGGCGGCGGCGATGAATTCGGGGATCAAGACGAAGAACGGCATGATCAACGTGCTGGACACCGTCAATGTCGGCGATTGCGCCGCGGGG....................................................................................................  >  NC_014034/144167‑144275 ....................................................................................................GCCGCGGGGTTTCAGGCGCTTTATCTGTCGGGCGCGGCGATGTCGGCCTCGATGGGCCTGCCGGACCTCGGCATCCTGACGGTGGACGAGGTCGCCTTTTTCATCCGCC  >  NC_014034/3541555‑3541654 Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG