New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1443613 =185 (0.910)2 (0.010) 2/180 34.3 0.01 coding (264/867 nt) RCAP_rcc01340 LysR family transcriptional regulator
?NC_014034 = 1583254 212 (0.940)coding (2505/3675 nt) nrdJ2 ribonucleoside‑diphosphate reductase NrdJ
Rejected: Position hash score below cutoff.

TGCGCCGCCAGACCGGGCACGAACTGACCGACCAGGGCGCGGCGCTGCTGCCCCGGGCCGAGGCGATGGAACTGGCATTGCAGGAAATGCGGCGCGAGGCCGGGGCGCAG....................................................................................................  <  NC_014034/1443722‑1443613
....................................................................................................CGGGGCGCAGAAAGGGGGCGCCTTCCAGCGTCATCGTCCCGCAGACATGATCGTTCGCCGCATCGATCTGCGCCTTGCTGAAGCCCAGATGGCGCAAAAGGTCAAAGGTC  <  NC_014034/1583254‑1583155
                                                                                                                                                                                                                  
                                           ctTGCTGCCCCGGGCCGAGGCGATGGAACTGGCATTGCAGGAAATGCGGCGCGAGGCCGGGGCGCAGAAAGGGGGCGCCTTCCAGCGTCATCGTCCCGCAG                                                                    <  2:2007734/99‑1 (MQ=255)
                                             TGCTGCCCCGGGCCGAGGCGATGGAACTGGCATTGCAGGAAATGCGGCGCGAGGCCGGGGCGCAGAAAGGGGGCGCCTTCCAGCGTCATCGTCCCGCAGAg                                                                  >  1:2007863/1‑100 (MQ=255)
                                                                                                                                                                                                                  
TGCGCCGCCAGACCGGGCACGAACTGACCGACCAGGGCGCGGCGCTGCTGCCCCGGGCCGAGGCGATGGAACTGGCATTGCAGGAAATGCGGCGCGAGGCCGGGGCGCAG....................................................................................................  <  NC_014034/1443722‑1443613
....................................................................................................CGGGGCGCAGAAAGGGGGCGCCTTCCAGCGTCATCGTCCCGCAGACATGATCGTTCGCCGCATCGATCTGCGCCTTGCTGAAGCCCAGATGGCGCAAAAGGTCAAAGGTC  <  NC_014034/1583254‑1583155

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG