New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1470060156 (0.780)2 (0.010) 2/178 34.1 0.01 coding (1428/1473 nt) RCAP_rcc01365 MORN repeat family protein
?NC_014034 = 2731017 183 (0.810)coding (2310/2757 nt) RCAP_rcc02540 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

TTCGCGGCATAGTTGCCAATAACGGCAGTGCGGGCATGAAAAATCGCGGCAGGATTGCGGGGGCCTCAGTCGGGGCTGCCGGGCGGCTGGGCTTGCGGTTGCGGCGGCGGG....................................................................................................  >  NC_014034/1469950‑1470060
....................................................................................................GCGGCGGCGGGTCTGGGCCCCGAGGATGTGCTGTTCGAGATCACCGAGGGCGCCGTCGTCGATCTGAATTCCGATGCGCGCGAGAGCATCGAGGCGCTGCTCGCTGCGGGC  <  NC_014034/2731017‑2730918
                                                                                                                                                                                                                   
                                                                       GGGGCTGCCGGGCGGCTGGGCTTGCGGTTGCGGCGGCGGGTCTGGGCCCCGAGGATGTGCTGTTCGAGATCACCGAGGGCGCCGTCGTCGATCTGAATTCC                                         >  2:3199871/1‑101 (MQ=255)
                                                                            TGCCGGGCGGCTGGGCTTGCGGTTGCGGCGGCGGGTCTGGGCCCCGAGGATGTGCTGTTCGAGATCACCGAGGGCGCCGTCGTCGATCTGAATTCCGATGC                                    <  1:3200100/101‑1 (MQ=255)
                                                                                                                                                                                                                   
TTCGCGGCATAGTTGCCAATAACGGCAGTGCGGGCATGAAAAATCGCGGCAGGATTGCGGGGGCCTCAGTCGGGGCTGCCGGGCGGCTGGGCTTGCGGTTGCGGCGGCGGG....................................................................................................  >  NC_014034/1469950‑1470060
....................................................................................................GCGGCGGCGGGTCTGGGCCCCGAGGATGTGCTGTTCGAGATCACCGAGGGCGCCGTCGTCGATCTGAATTCCGATGCGCGCGAGAGCATCGAGGCGCTGCTCGCTGCGGGC  <  NC_014034/2731017‑2730918

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG