New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1509996 =216 (0.960)2 (0.010) 2/198 36.0 0.01 coding (687/1092 nt) RCAP_rcc01401 AraC family transcriptional regulator
?NC_014034 2036260 = 203 (0.900)coding (86/1068 nt) iscS cysteine desulfurase
Rejected: Position hash score below cutoff.

GGCGCGAATAGCCGGACCCGCGGGCCAGATCGGTCAGCGACAGCGGCTCTTCCAGATGCGCCTTCATCCGCGCGACGATCGCGATCAGGCCCGGATTGCGC.....................................................................  <  NC_014034/1510096‑1509996
....................................................................................................CACGACCTCCATCGCCGCAATCATCGCCGCCCTCGCCTCCGGGCGCAGCGGCGTCGTCGCGTTCCAGTCG  >  NC_014034/2036260‑2036328
                                                                                                                                                                          
                                                       ATGCGCCTTCATCCGCGCGACGATCGCGATCAGGCCCGGATTGCGCACGACCTCCATCGCCGCAATCATCGCCGCCCTCGCCTCCGGGCGCAGCGGCGTCG                >  2:3178531/1‑101 (MQ=255)
                                                                     GCGCGACGATCGCGATCAGGCCCGGATTGCGCACGACCTCCATCGCCGCAATCATCGCCGCCCTCGCCTCCGGGCGCAGCGGCGTCGTCGCGTTCCAGTCG  <  1:3178758/101‑1 (MQ=255)
                                                                                                                                                                          
GGCGCGAATAGCCGGACCCGCGGGCCAGATCGGTCAGCGACAGCGGCTCTTCCAGATGCGCCTTCATCCGCGCGACGATCGCGATCAGGCCCGGATTGCGC.....................................................................  <  NC_014034/1510096‑1509996
....................................................................................................CACGACCTCCATCGCCGCAATCATCGCCGCCCTCGCCTCCGGGCGCAGCGGCGTCGTCGCGTTCCAGTCG  >  NC_014034/2036260‑2036328

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG