New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1631187 =	237 (1.130)	2 (0.010)	2/186	34.9	0.01	coding (643/720 nt)	RCAP_rcc01505	hypothetical protein
	?	NC_014034	= 3332585	219 (0.970)					coding (1546/1962 nt)	ccmF	cytochrome c‑type biogenesis protein CcmF
Rejected: Position hash score below cutoff.

CGACATTTCCGTGGTGCTGCTGAGCGAAGAGGTCGAGACGCATGATTTCGGCACCGAGCGGCTGGTGCTGGCCGATATCACGCTGCGCCTGCCCTGCGCTTTCGCCA....................................................................................................  <  NC_014034/1631293‑1631187 ....................................................................................................TTCGCCACGCGGATATCCTCGACCTGCCCGGCCATCAAGAGGCCGACGCCCGCAAAGACGATGCCCAGCCCGCCATGCGCGAAGGCCTTGCCCCAATCCGCCCGCGG  <  NC_014034/3332585‑3332486                                                                                                                                                                                                                                                  CGAGACGCATGATTTCGGCACCGAGCGGCTGGTGCTGGCCGATATCACGCTGCGCCTGCCCTGCGCTTTCGCCACGCGGATATCCTCGACCTGCCCGGCCA                                                                           >  2:934656/1‑101 (MQ=255)                                     GACGCATGATTTCGGCACCGAGCGGCTGGTGCTGGCCGATATCACGCTGCGCCTGCCCTGCGCTTTCGCCACGCGGATATCCTCGACCTGCCCGGCCATCA                                                                        <  1:934741/101‑1 (MQ=255)                                                                                                                                                                                                                 CGACATTTCCGTGGTGCTGCTGAGCGAAGAGGTCGAGACGCATGATTTCGGCACCGAGCGGCTGGTGCTGGCCGATATCACGCTGCGCCTGCCCTGCGCTTTCGCCA....................................................................................................  <  NC_014034/1631293‑1631187 ....................................................................................................TTCGCCACGCGGATATCCTCGACCTGCCCGGCCATCAAGAGGCCGACGCCCGCAAAGACGATGCCCAGCCCGCCATGCGCGAAGGCCTTGCCCCAATCCGCCCGCGG  <  NC_014034/3332585‑3332486 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG