New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	34 (0.170)	45 (0.230)	18/176	21.1	0.25	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 2950747	235 (1.040)					intergenic (+90/‑70)	RCAP_rcc02761/RCAP_rcc02762	glutathione S‑transferase/4Fe‑4S ferredoxin, iron‑sulfur cluster binding protein
Rejected: Position hash score below cutoff.

GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC............................................................  <  NC_014034/1640105‑1640006 ................................................................................................................CCCCCGGGATATTTGGGGCAAGATGAAAGGGGCGTGTTTCATCTTGCC  <  NC_014034/2950747‑2950700                                                                                                     ||||||||||||                                                 GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                             <  2:1402525/101‑1 (MQ=1) GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                             <  1:2505123/101‑1 (MQ=1) GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                             <  1:428419/101‑1 (MQ=1) GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                             <  1:4175358/101‑1 (MQ=1)   GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                                           <  1:1204484/101‑1 (MQ=1)    ATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCC                                                          <  2:1286528/101‑1 (MQ=1)    ATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCC                                                          <  1:3182644/101‑1 (MQ=1)      CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCC                                                        <  1:1106617/101‑1 (MQ=1)      CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCC                                                        <  2:2964591/101‑1 (MQ=1)       TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                       <  2:3942957/101‑1 (MQ=1)       TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                       <  2:3170201/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                      <  2:3458200/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                      <  2:2764940/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                      <  2:1149489/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                      <  1:2067289/101‑1 (MQ=1)         GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                                     <  1:2777056/101‑1 (MQ=1)          GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGG                                                    <  2:2692596/101‑1 (MQ=1)          GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGG                                                    <  2:2557792/101‑1 (MQ=1)            CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGC                                                  <  1:729367/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                             <  1:1215935/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                             <  1:1648436/101‑1 (MQ=1)                  GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                                            <  2:496413/101‑1 (MQ=1)                  GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                                            <  1:479916/101‑1 (MQ=1)                   GCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                                           <  1:2873755/101‑1 (MQ=1)                   GCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                                           <  2:1621041/101‑1 (MQ=1)                     GATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGA                                         <  2:1498276/101‑1 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                        <  1:4387768/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                      <  1:3411153/101‑1 (MQ=1)                           GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTG                                   <  2:4001707/101‑1 (MQ=1)                           GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTCCCCCCCGGGCCCCCCGGGATATTTG                                   <  2:3054581/101‑1 (MQ=1)                             TCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGG                                 <  1:4190192/101‑1 (MQ=1)                              tTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATCTGGGG                                <  1:865870/100‑1 (MQ=1)                              CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                                <  2:2437084/101‑1 (MQ=1)                               TTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGC                               <  1:1805490/101‑1 (MQ=1)                                TTTGAAACATCGCGGTCTCCTTCGTCAACGGCTGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                              <  1:1886487/101‑1 (MQ=1)                                TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                              <  1:4352643/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA                             <  2:309034/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCCCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA                             <  2:884845/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                            <  2:1631071/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                            <  2:473330/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGA                           <  2:3063283/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGA                           <  2:1831399/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGA                           <  1:3410791/101‑1 (MQ=1)                                    AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT                          <  2:650917/101‑1 (MQ=1)                                    AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT                          <  1:2541996/101‑1 (MQ=1)                                    AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT                          <  2:3199038/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA                       <  2:1132183/101‑1 (MQ=1)                                        ATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAA                      <  1:1348068/101‑1 (MQ=1)                                        ATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAA                      <  2:2949176/101‑1 (MQ=1)                                         TCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAG                     <  1:4185411/101‑1 (MQ=1)                                             GGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGat                 <  1:996336/101‑3 (MQ=31)                                             GGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGat                 <  1:4165218/101‑3 (MQ=31)                                              gcCTCCTTCGTCAACGGCGGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatg                <  1:3769237/99‑4 (MQ=17)                                              GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatg                <  1:3224075/101‑4 (MQ=32)                                                  CCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatgggtt            <  2:3182954/101‑8 (MQ=37)                                                   CTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatgggttt           <  2:947770/101‑9 (MQ=38)                                                   CTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatgggttt           <  2:2497095/101‑9 (MQ=38)                                                   CTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGatgggttt           <  1:666993/101‑9 (MQ=38)                                                        gCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCT      <  2:1326681/100‑1 (MQ=39)                                                        TCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCT      <  1:307894/101‑1 (MQ=39)                                                         CAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCTT     <  2:928793/101‑1 (MQ=39)                                                          AACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCTTG    <  2:3268462/101‑1 (MQ=40)                                                          AACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCTTG    <  2:2376427/101‑1 (MQ=40)                                                            CGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATGGGTTTCATCTTGCC  <  1:1918563/101‑1 (MQ=40)                                                                                                     ||||||||||||                                                 GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC............................................................  <  NC_014034/1640105‑1640006 ................................................................................................................CCCCCGGGATATTTGGGGCAAGATGAAAGGGGCGTGTTTCATCTTGCC  <  NC_014034/2950747‑2950700 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG