New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	37 (0.190)	14 (0.070)	8/168	27.0	0.18	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2590221	87 (0.380)					intergenic (‑120/‑136)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG..............................................................................................................  <  NC_014034/1700044‑1699965 .................................................................................................CGCCGAGGCGACCCGGC.GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACC  <  NC_014034/2590221‑2590130                                                                                  ||||||||||||||||                                                                                              GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCC                                                                                           <  1:3523366/101‑1 (MQ=0) GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCC                                                                                           <  2:2349207/101‑1 (MQ=0)  ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCG                                                                                          <  1:2460360/101‑1 (MQ=0)  ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCG                                                                                          <  1:644990/101‑1 (MQ=0)    GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAG                                                                                        <  2:1653283/101‑1 (MQ=0)     CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGG                                                                                       <  2:2438311/101‑1 (MQ=0)      CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC                                                                                      <  1:2146355/101‑1 (MQ=0)      CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC                                                                                      <  2:2938657/101‑1 (MQ=0)          TTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACC                                                                                  <  2:2325175/101‑1 (MQ=0)          TTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACC                                                                                  <  2:4310254/101‑1 (MQ=0)          TTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACC                                                                                  <  2:907216/101‑1 (MQ=0)                  CGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGG                                                                         <  2:1395496/101‑1 (MQ=255)                   GATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCccgcg                                                                         >  2:613485/1‑96 (MQ=255)                        TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGGGgctcc                                                                   <  1:3585921/101‑6 (MQ=255)                                                                                          TCGGCTGGCGCCGAGGCGACCCGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACC  <  1:3057874/101‑1 (MQ=255)                                                                                  ||||||||||||||||                                                                                              GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG..............................................................................................................  <  NC_014034/1700044‑1699965 .................................................................................................CGCCGAGGCGACCCGGC.GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACC  <  NC_014034/2590221‑2590130 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG