New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1717016190 (0.910)2 (0.010) 2/184 34.7 0.01 coding (127/1311 nt) RCAP_rcc01585 hypothetical protein
?NC_014034 = 2322529 162 (0.720)coding (2537/2607 nt) RCAP_rcc02155 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCCTCCCGCGCCCCGGAGCCGCAGGGCGGCTGGTCCACCAGGATCGTCTGCGTGCCCGATGCGCTGGTCGTGCCCGCAACCGTGCCCGACATGGTGCAGCCGATGG....................................................................................................  >  NC_014034/1716909‑1717016
....................................................................................................GCCGATGGTGGCGATGGCCGATGTGGCGGGGCTGATCGCGGCCGGTCGGCGCGGGCTCTTGCGGCGCAACCCGGGCTGATCAGGCGTCATAGCCCTGCATCAGCCGCA  <  NC_014034/2322529‑2322430
                                                                                                                                                                                                                
                                TGGTCCACCAGGATCGTCTGCGTGCCCGATGCGCTGGTCGTGCCCGCAACCGTGCCCGACATGGTGCAGCCGATGGTGGCGATGGCCGATGTGGCGGGGgt                                                                             >  1:590502/1‑99 (MQ=255)
                                TGGTCCACCAGGATCGTCTGCGTGCCCGATGCGCTGGTCGTGCCCGCAACCGTGCCCGACATGGTGCAGCCGATGGTGGCGATGGCCGATGTGGCGGGGCT                                                                             <  2:590434/101‑1 (MQ=255)
                                                                                                                                                                                                                
ATCCCTCCCGCGCCCCGGAGCCGCAGGGCGGCTGGTCCACCAGGATCGTCTGCGTGCCCGATGCGCTGGTCGTGCCCGCAACCGTGCCCGACATGGTGCAGCCGATGG....................................................................................................  >  NC_014034/1716909‑1717016
....................................................................................................GCCGATGGTGGCGATGGCCGATGTGGCGGGGCTGATCGCGGCCGGTCGGCGCGGGCTCTTGCGGCGCAACCCGGGCTGATCAGGCGTCATAGCCCTGCATCAGCCGCA  <  NC_014034/2322529‑2322430

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG