New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732710 =	42 (0.200)	26 (0.120)	12/186	25.9	0.33	intergenic (‑134/‑269)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	3276380 =	64 (0.280)					intergenic (‑132/+117)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

CTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC................................................................................................  <  NC_014034/1732816‑1732710 ....................................................................................................CGGGGGCGGAGCCCCCG.GCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGGA  >  NC_014034/3276380‑3276474                                                                                                                                                                                                                    AAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                 <  2:500592/101‑1 (MQ=1)         AGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                >  1:2889601/1‑101 (MQ=1)          GCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                               <  1:1967848/101‑1 (MQ=1)          GCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                               <  2:2116198/101‑1 (MQ=1)           CGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                              <  2:2334415/101‑1 (MQ=1)           CGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                              >  1:4119566/1‑101 (MQ=1)            GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                             <  2:833814/101‑1 (MQ=1)            GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                             >  1:2865157/1‑101 (MQ=1)            GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGGCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGGGCGGGGGCGGAGC                                                                                             >  1:2208076/1‑101 (MQ=0)             GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                            <  2:2670165/101‑1 (MQ=1)             GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                            >  1:3384421/1‑101 (MQ=1)             GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                            <  1:3446233/101‑1 (MQ=1)             GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCGGCAGGGGGGTTTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                            <  1:509692/101‑1 (MQ=0)              GGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCC                                                                                           >  1:345314/1‑101 (MQ=1)                CCCTTGCCTGTTGCCGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGTTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                         <  1:4359490/101‑1 (MQ=0)                CCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                         <  1:2927042/101‑1 (MQ=1)                 CCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG                                                                                        >  1:2137218/1‑101 (MQ=1)                 CCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGAGGAGCCCCCG                                                                                        >  2:1408594/1‑101 (MQ=1)                     GCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccg                                                                                    >  1:2214088/1‑97 (MQ=33)                      CCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGGGGAGCCCCCGcccgg                                                                                   >  2:1033515/1‑96 (MQ=21)                       CTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccggg                                                                                  >  1:2785057/1‑95 (MQ=35)                         GTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggtc                                                                                >  2:3954447/1‑93 (MQ=38)                         GTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggtc                                                                                >  1:1576589/1‑93 (MQ=38)                            GACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCC                                                                             >  1:452265/1‑101 (MQ=39)                            GACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCC                                                                             >  2:4239501/1‑101 (MQ=39)                              CGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGC                                                                           >  1:3482338/1‑101 (MQ=39)                                                                                                                                                                                                             CTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC................................................................................................  <  NC_014034/1732816‑1732710 ....................................................................................................CGGGGGCGGAGCCCCCG.GCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGGA  >  NC_014034/3276380‑3276474 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG