New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 175059 =258 (1.240)2 (0.010) 2/184 34.7 0.01 coding (525/945 nt) RCAP_rcc00153 peptide ABC transporter permease
?NC_014034 3040716 = 210 (0.930)intergenic (‑223/‑177) dorS/thiM DMSO/TMAO‑sensor hybrid histidine kinase/hydroxyethylthiazole kinase
Rejected: Position hash score below cutoff.

GGGCTTGCGGCAAAGGCCGCCATCGCATCGCGGGCAATCCGCGCCGAGGCCGCAGCCAGCCCCAGCGCCAGCGTCAGCCCGGGCAGGACCAGATGGCGGATGTCCCCG....................................................................................................  <  NC_014034/175166‑175059
....................................................................................................TGTCCCCGGCCACTGGACAAGCCCCGCCATCCGTGCTTCCCTGCCCTTGCGACAGGGGCGTCCGGGCATCCGGGCTGAGAAGCACCCTTTGAACCTGAACCAGATCAT  >  NC_014034/3040716‑3040815
                                                                                                                                                                                                                
                                                    CAGCCAGCCCCAGCGCCAGCGTCAGCCCGGGCAGGACCAGATGGCGGATGTCCCCGGCCACTGGACAAGCCCCGCCATCCGTGCTTCCCTGCCCTTGCGAC                                                         >  2:399684/1‑101 (MQ=255)
                                                               AGCGCCAGCGTCAGCCCGGGCAGGACCAGATGGCGGATGTCCCCGGCCACTGGACAAGCCCCGCCATCCGTGCTTCCCTGCCCTTGCGACAGGGGCGTCCG                                              <  1:399723/101‑1 (MQ=255)
                                                                                                                                                                                                                
GGGCTTGCGGCAAAGGCCGCCATCGCATCGCGGGCAATCCGCGCCGAGGCCGCAGCCAGCCCCAGCGCCAGCGTCAGCCCGGGCAGGACCAGATGGCGGATGTCCCCG....................................................................................................  <  NC_014034/175166‑175059
....................................................................................................TGTCCCCGGCCACTGGACAAGCCCCGCCATCCGTGCTTCCCTGCCCTTGCGACAGGGGCGTCCGGGCATCCGGGCTGAGAAGCACCCTTTGAACCTGAACCAGATCAT  >  NC_014034/3040716‑3040815

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG