New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1775379 =	166 (0.820)	2 (0.010)	2/180	34.3	0.01	coding (1201/2424 nt)	RCAP_rcc01642	hypothetical protein
	?	NC_014034	2064791 =	165 (0.730)					coding (309/1092 nt)	plsX	fatty acid/phospholipid synthesis protein PlsX
Rejected: Position hash score below cutoff.

GTGTGGCGGGGCGACCGAACGCGCCTTCGTGCGCGACAATGCCGACCGGATGATGATCGGCTCGGCCTATGCCTGTGATCTGCCCTTTGATCTGGGCGCGGCGACGGCGC....................................................................................................  <  NC_014034/1775488‑1775379 ....................................................................................................GCGACGGCGCGGCGCAGGTCGCGGTGTCCTGCGGCAATACCGGCGCGCTGATGGCGGTCTCGATGCTGCGGCTGCGCAAGATGCCAGGGGTGAACCGGCCTGCCATCGCT  >  NC_014034/2064791‑2064890                                                                                                                                                                                                                                                        CAATGCCGACCGGATGATGATCGGCTCGGCCTATGCCTGTGATCTGCCCTTTGATCTGGGCGCGGCGACGGCGCGGCGCAGGTCGCGGTGTCCTGCGGCAA                                                                           >  1:2775298/1‑101 (MQ=255)                                                      TGATCGGCTCGGCCTATGCCTGTGATCTGCCCTTTGATCTGGGCGCGGCGACGGCGCGGCGCAGGTCGCGGTGTCCTGCGGCAATACCGGCGCGCTGATGG                                                          <  2:2775108/101‑1 (MQ=255)                                                                                                                                                                                                                    GTGTGGCGGGGCGACCGAACGCGCCTTCGTGCGCGACAATGCCGACCGGATGATGATCGGCTCGGCCTATGCCTGTGATCTGCCCTTTGATCTGGGCGCGGCGACGGCGC....................................................................................................  <  NC_014034/1775488‑1775379 ....................................................................................................GCGACGGCGCGGCGCAGGTCGCGGTGTCCTGCGGCAATACCGGCGCGCTGATGGCGGTCTCGATGCTGCGGCTGCGCAAGATGCCAGGGGTGAACCGGCCTGCCATCGCT  >  NC_014034/2064791‑2064890 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG