New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1795047	246 (1.090)	3 (0.010)	3/178	32.9	0.01	coding (13/720 nt)	RCAP_rcc01658	two component LuxR family transcriptional regulator
	?	NC_014034	1795051 =	222 (0.980)					coding (17/720 nt)	RCAP_rcc01658	two component LuxR family transcriptional regulator
Rejected: Position hash score below cutoff.

CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAAC..................................................................................................  >  NC_014034/1794948‑1795047 ....................................................................................................CCGCCGCCGCCAGCCCGCGCACCGATTTCCGCTCGGCGCTGATCGTCGATGACCACCCGCTGTTTTGCGACGCGCTGGCGATGACGCTGCAGGCGGTG  >  NC_014034/1795051‑1795148                                                                                                                                                                                                        CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACC                                                                                                   <  2:2135288/101‑1 (MQ=255) CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACC                                                                                                   <  1:981640/101‑1 (MQ=255) CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACC                                                                                                   >  1:4331801/1‑101 (MQ=255) CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACC                                                                                                   >  1:3248499/1‑101 (MQ=255)  ATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCC                                                                                                  <  1:573793/101‑1 (MQ=255)  ATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCC                                                                                                  >  1:1280579/1‑101 (MQ=255)  ATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCC                                                                                                  <  1:1361037/101‑1 (MQ=255)   TTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCG                                                                                                 <  2:4222768/101‑1 (MQ=255)    TGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGC                                                                                                <  1:299630/101‑1 (MQ=255)    TGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGC                                                                                                >  2:3109416/1‑101 (MQ=255)    TGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGC                                                                                                <  1:1799027/101‑1 (MQ=255)     GGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCC                                                                                               <  2:1737452/101‑1 (MQ=255)      GACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCG                                                                                              >  2:3910232/1‑101 (MQ=255)        CAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCC                                                                                            >  1:2497896/1‑101 (MQ=255)         AATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCG                                                                                           >  2:1174939/1‑101 (MQ=255)         AATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCG                                                                                           >  1:2753893/1‑101 (MQ=255)         AATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGAACCCGGAACCCGCCGCCG                                                                                           >  2:3229101/1‑101 (MQ=255)          ATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGC                                                                                          >  2:1551171/1‑101 (MQ=255)          ATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGC                                                                                          >  2:3086291/1‑101 (MQ=255)           TACGGGGGCGGCTCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGCC                                                                                         <  1:2911505/101‑1 (MQ=255)           TACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGCC                                                                                         <  1:3601780/101‑1 (MQ=255)                                                gatctTCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGCCAGCCCGCGCACCGATTTCCGCTCGGCGCTGATCGTCG                                                    <  2:3925592/96‑1 (MQ=255)                                                     TCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAACCCGCCGCCGCCAGCCCGCGCACCGATTTCCGCTCGGCGCTGATCGTCGAgatc                                               >  1:3925846/1‑97 (MQ=255)                                                                                                  ccCCCGCCGCCGCCAGCCCGCGCACCGATTTCCGCTCGGCGCTGATCGTCGATGACCACCCGCTGTTTTGCGACGCGCTGGCGATGACGCTGCAGGCGGTG  <  1:4218224/99‑1 (MQ=255)                                                                                                                                                                                                        CATTGGACAATACGGGGGCGGCGCTATGATTGTTAGGGTGCAAAGACACTTATCGCCCAAAGGGCGGAGAGAGACAGGACAGGCCCGATGACCCCGGAAC..................................................................................................  >  NC_014034/1794948‑1795047 ....................................................................................................CCGCCGCCGCCAGCCCGCGCACCGATTTCCGCTCGGCGCTGATCGTCGATGACCACCCGCTGTTTTGCGACGCGCTGGCGATGACGCTGCAGGCGGTG  >  NC_014034/1795051‑1795148 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG