New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1832673186 (0.900)2 (0.010) 2/182 34.5 0.01 coding (3813/3915 nt) RCAP_rcc01698 hypothetical protein
?NC_014034 = 2198382 175 (0.770)coding (487/729 nt) cobA2 uroporphyrinogen‑III C‑methyltransferase
Rejected: Position hash score below cutoff.

GCCGCTGGGCGAGACGGCGGAACTTTATCTGGTCCGGGTGCTGGAGGGGACGGCGGTGAAGCGCGAGGTGACGGTGGGGGAGGCCAGCTGGAGCTATCCCGCGGCGCTG....................................................................................................  >  NC_014034/1832565‑1832673
....................................................................................................GCGGCGCTGGCCGACAAGGGGGCGACGACCGTCGTCTTCATGGGCAAGCGCACCTTTCCGAAACTGGCCGCCGATCTGATCGCGCATGGGCTGGCCCCCGATACGCCCG  <  NC_014034/2198382‑2198283
                                                                                                                                                                                                                 
                                 CCGGGTGCTGGAGGGGACGGCGGTGAAGCGCGAGGTGACGGTGGGGGAGGCCAGCTGGAGCTATCCCGCGGCGCTGGCCGACAAGGGGGCGACGACCGTCG                                                                             >  1:3569933/1‑101 (MQ=255)
                                                                GAGGTGACGGTGGGGGAGGCCAGCTGGAGCTATCCCGCGGCGCTGGCCGACAAGGGGGCGACGACCGTCGTCTTCATGGGCAAGCGCACCTTTCCGAAACT                                              <  2:3569685/101‑1 (MQ=255)
                                                                                                                                                                                                                 
GCCGCTGGGCGAGACGGCGGAACTTTATCTGGTCCGGGTGCTGGAGGGGACGGCGGTGAAGCGCGAGGTGACGGTGGGGGAGGCCAGCTGGAGCTATCCCGCGGCGCTG....................................................................................................  >  NC_014034/1832565‑1832673
....................................................................................................GCGGCGCTGGCCGACAAGGGGGCGACGACCGTCGTCTTCATGGGCAAGCGCACCTTTCCGAAACTGGCCGCCGATCTGATCGCGCATGGGCTGGCCCCCGATACGCCCG  <  NC_014034/2198382‑2198283

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG