New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1875664 =164 (0.760)2 (0.010) 2/190 35.3 0.01 coding (379/915 nt) oxyR hydrogen peroxide‑inducible genes activator
?NC_014034 = 2445048 227 (1.000)coding (377/792 nt) RCAP_rcc02270 LuxR family transcriptional regulator
Rejected: Position hash score below cutoff.

TTTCGGGGCGGCTGCGGCTGGGGGTCATTCCGACGATTGCACCCTATCTTCTGCCCGGCCTGGTCGCGGGGCTTGTGCAGAGCCACCCGGGGCTTGACGTCGCCC....................................................................................................  <  NC_014034/1875768‑1875664
....................................................................................................CGCCCGCATCCAGCATGAAGCCGATCTCCTCGGCCAGCTCGGTCCGGACATAGTAATTGCGGAAATATTCGCCTTGATAGAAGCGGTCGGGCGCCAGATCGCGCA  <  NC_014034/2445048‑2444949
                                                                                                                                                                                                             
                                                                   GGGGCTTGTGCAGAGCCACCCGGGGCTTGACGTCGCCCGCATCCAGCATGAAGCCGATCTCCTCGGCCAGCTCGGTCCGGACATAGTAATTGCGGAAATAT                                       >  2:257243/1‑101 (MQ=255)
                                                                           TGCAGAGCCACCCGGGGCTTGACGTCGCCCGCATCCAGCATGAAGCCGATCTCCTCGGCCAGCTCGGTCCGGACATAGTAATTGCGGAAATATTCGCCTTG                               <  1:257270/101‑1 (MQ=255)
                                                                                                                                                                                                             
TTTCGGGGCGGCTGCGGCTGGGGGTCATTCCGACGATTGCACCCTATCTTCTGCCCGGCCTGGTCGCGGGGCTTGTGCAGAGCCACCCGGGGCTTGACGTCGCCC....................................................................................................  <  NC_014034/1875768‑1875664
....................................................................................................CGCCCGCATCCAGCATGAAGCCGATCTCCTCGGCCAGCTCGGTCCGGACATAGTAATTGCGGAAATATTCGCCTTGATAGAAGCGGTCGGGCGCCAGATCGCGCA  <  NC_014034/2445048‑2444949

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG