New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 201029 =227 (1.070)2 (0.010) 2/188 35.1 0.01 coding (16/1230 nt) kpsE1 capsule polysaccharide export inner‑membrane protein KpsE
?NC_014034 = 2849236 204 (0.900)coding (375/648 nt) RCAP_rcc02658 lipoprotein
Rejected: Position hash score below cutoff.

GCGGCCGGGCCGCGGCAGGATTGGGGATCGGCTTCGGTGCCCGTTTGACCGCGGCATCGGCCGCTTCCGACAGCTGCTTGTTAATCGCCCTTACTCCCGTCGCGCC....................................................................................................  <  NC_014034/201134‑201029
....................................................................................................CGCGCCGTCGCCATCGGTATCAAGATCAAGGATGCGCGCGCGCGTGCCAAGCTCGGCCTTGATGACCTTGCCCTGATCCTTGAGCGCGAAATTCCAGGGCGAGCCA  <  NC_014034/2849236‑2849137
                                                                                                                                                                                                              
                                  CGGTGCCCGTTTGACCGCGGCATCGGCCGCTTCCGACAGCTGCTTGTTAATCGCCCTTACTCCCGTCGCGCCGTCGCCATCGGTATCAAGATCAAGGATGC                                                                         >  2:488141/1‑101 (MQ=255)
                                                             CGCTTCCGACAGCTGCTTGTTAATCGCCCTTACTCCCGTCGCGCCGTCGCCATCGGTATCAAGATCAAGGATGCGCGCGCGCGTGCCAAGCTCGGCCTTGA                                              <  1:488193/101‑1 (MQ=255)
                                                                                                                                                                                                              
GCGGCCGGGCCGCGGCAGGATTGGGGATCGGCTTCGGTGCCCGTTTGACCGCGGCATCGGCCGCTTCCGACAGCTGCTTGTTAATCGCCCTTACTCCCGTCGCGCC....................................................................................................  <  NC_014034/201134‑201029
....................................................................................................CGCGCCGTCGCCATCGGTATCAAGATCAAGGATGCGCGCGCGCGTGCCAAGCTCGGCCTTGATGACCTTGCCCTGATCCTTGAGCGCGAAATTCCAGGGCGAGCCA  <  NC_014034/2849236‑2849137

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG